Table 4.

Important SNPs found in the NucleoNets. Chr:Pos means Chromosome:Position. Suffix in each SNP denotes its alternate allele. *Intronic. **Intergenic.

Model	SNP name	Chr:Pos	NucleoNets		Marginal regression		Full regression
			Count	$\overline{{\alpha }^{\prime }}$	$p$-value	$\beta$	$p$-value	$\beta$
NucleoNetV1	TBGI336584_T*	7:28,902,549	104	0.349702	0.692976	0.367086	0.613405	− 0.00464
	TBGI139174_C*	3:10,546,292	100	0.078781	0.501128	0.118872	0.258786	− 0.05250
	TBGI043687_A*	1:27,033,613	98	0.039402	0.461979	0.092519	0.749955	0.018242
	TBGI047097_A*	1:29,101,182	87	0.043968	0.245114	0.146880	0.731616	− 0.00822
	id2008820_T*	2:23,034,401	48	0.028928	0.293053	0.133663	0.487864	− 0.15724
NucleoNetV2	id4010708_C	4:31,871,929	76	0.334360	0.023139	0.178155	0.181538	0.092289
	TBGI133654_T*	3:6,221,117	71	0.073753	0.981030	− 0.00224	0.051080	− 0.11139
	TBGI133263_A**	3:5,884,040	64	0.057674	0.554272	0.060059	0.616267	0.035691
	id1010403_T*	1:16,716,706	53	0.040871	0.275980	0.377068	0.725071	0.007040
	TBGI272488_T*	6:3,001,902	34	0.363929	0.451712	0.057712	0.725524	0.014053
NucleoNetV3	id10004275_C	10:16,252,942	102	0.050838	0.523674	− 0.37561	0.373641	0.050556
	TBGI264076_A*	5:27,953,016	91	0.125639	0.90349	0.018688	0.611320	− 0.01367
	TBGI130922_G**	3:4,441,747	75	0.032907	0.356457	− 0.07551	0.933317	− 0.00536
	TBGI038001_C*	1:23,689,014	73	0.133440	0.564393	− 0.04618	0.195798	− 0.06157
	TBGI336599_C*	7:28,905,733	73	0.043163	0.930258	− 0.00685	0.535020	− 0.03080