Skip to main content
. 2022 Jul 19;3(7):100686. doi: 10.1016/j.xcrm.2022.100686
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

phosphorylated RET-Y905 Cell Signaling Technology Cat#3221; RRID: AB_2179887
phosphorylated RET-Y1062 Abcam Cat#ab51103; RRID: AB_870738
RET E1N8X Cell Signaling Technology Cat#14556; RRID: AB_2798509
RET Abcam Ab134100; RRID: AB_2920824
phosphorylated AKT-S473 Cell Signaling Technology Cat#9271; RRID: AB_329825
AKT Cell Signaling Technology Cat#9272; RRID: AB_329827
phosphorylated ERK T202/Y204 Cell Signaling Technology Cat#4377; RRID: AB_331775
ERK1/ERK2 Cell Signaling Technology Cat#4695; RRID: AB_390779
GRB2 Cell Signaling Technology Cat#36344; RRID: AB_2920901
PARP Cell Signaling Technology Cat#9542; RRID: AB_2160739
β-actin Cell Signaling Technology Cat#3700; RRID: AB_2242334
α-tubulin Cell Signaling Technology Cat#3873; RRID: AB_1904178
Purified anti-HA.11 Epitope Tag Antibody BioLegend Cat#901501; RRID: AB_2565006
Anti-Myc/c-Myc Antibody (9E10) Santa Cruz Biotechnology Cat#sc-40; RRID: AB_2857941
Na,K-ATPase α1 (D4Y7E) Rabbit mAb Cell Signaling Technology Cat#23565; RRID: AB_2798866
Goat anti-Mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 Invitrogen Cat#A-11001; RRID: AB_2534069
Alexa Fluor™ 647 Goat Anti-Rabbit SFX Kit, highly cross-adsorbed Invitrogen Cat#A31634
Anti-Ret Antibody (8D10C9) Santa Cruz Biotechnology Cat#sc-101422; RRID: AB_2269605

Bacterial and virus strains

ONE SHOT STBL3 COMP E COLI Invitrogen Cat#C737303

Biological samples

Human tumor samples This paper N/A

Chemicals, peptides, and recombinant proteins

RPMI (cell medium) Corning Cat#10040-CV
Fetal Bovine Serum Gibco Cat#26140079
DAPI (4′,6-Diamidino-2-Phenylindole, Dilactate) Thermo Fisher Scientific Cat#EN62248
TrypLE Select, 10× Thermo Fisher Scientific Cat#A1217701
Hygromycin B Invitrogen Cat# 10687010
Puromycin dihydrochloride Gibco Cat#A1113803
Blasticidin Gibco Cat#R21001
Selpercatinib ChemieTek Cat#CT-LX292
Pralsetinib ChemieTek Cat#CT-BLU667
Human GDNF (glial-derived neurotrophic factor) Preprotech Cat#450-10-100UG
Recombinant Murine IL-3 Preprotech Cat#213-13

Critical commercial assays

NEBNext® Ultra TM RNA Library Prep Kit for Illumina New England BioLabs Cat#E7760L
High-Capacity cDNA Reverse Transcription Kit Applied Biosystems Cat#4368814
Phusion High-Fidelity PCR Master Mix with GC Buffer Thermo Fisher Scientific Cat#F532L
iQ SYBR Green Supermix Bio-Rad Cat#1708880

Deposited data

RET::GRB2 ORF sequence This paper NCBI-Bankit (accession number: ON799207)

Experimental models: Cell lines

293FT Cell Line Thermofisher/Invitrogen Cat#R70007
SH-SY5Y ATCC Cat#CRL-2266
Ba/F3 Creative Biogene Cat#CSC-RO0120

Oligonucleotides

Primer: RET-GRB2 long isoform_F Forward: TTGCGGACATCAGCAAAG This paper N/A
Primer: RET-GRB2 long isoform_F Reverse: CAGGAGCGCTCTCACTCTCT This paper N/A
Primer: RET-GRB2 short isoform_F Forward: TGCGGACATCAGCAAAGAC This paper N/A
Primer: RET-GRB2 short isoform_R Reverse: GAACTTCACCACCCAGAGG A This paper N/A
Primer RETe4F TGGTGATGGTGCCCTTCC This paper N/A
Primer RETe5R CTGATGCAGGTACCACGTCT This paper N/A
Primer: RET_e8_cDNA_F Forward: GGCTGGAGTGTGAGGAGTGT This paper N/A
Primer: RET_e9_cDNA_R Reverse: AGGTCTTGGTGCTGGGAGA G This paper N/A
Primer: RET_e19_cDNA_F Forward: CTGGTGGACTGTAATAATGC This paper N/A
Primer: RET_e20_cDNA_R Reverse: TTGGATATCTTGGAAACCCA This paper N/A

Recombinant DNA

pLV[Exp]-Puro-EF1A>3x N-flag-RET_1-18_GRB2_2-3-4-5 This paper Custom order-By VectorBuilder VB210223-1137nqa
pLV[Exp]-Hygro- EF1A>hRET[NM_020975.6]/Myc This paper Custom order-By VectorBuilder
VB210227-1059nqh
pLV[Exp]-Bsd- EF1A>hRET[NM_020630.6]/Myc This paper Custom order-By VectorBuilder
VB210227-1062nya
pLV[Exp]-Puro-EF1A>[C-HA- RET_1-18-GRB2_2-3-4-5]/HA This paper Custom order-By VectorBuilder
VB210227-1065xvg
pLV[Exp]-EGFP:T2A:Puro- EF1A>mCherry VectorBuilder Inc By VectorBuilder
VB160109-10005
pLV[Exp]-Puro- EF1A>[C-HA-RET_1-18-GRB2_2-3-4-5]/HA This paper Custom order-By VectorBuilder
VB210227-1065xvg
psPAX2 Addgene Addgene #12260; RRID:Addgene_12260
pMD2.G Addgene Addgene #12259; RRID:Addgene_12259
pLV-RET51-c-Myc-C634R This paper N/A
pLV-RET51-c-Myc-K758M This paper N/A
pLV-RET9-c-Myc-D1014X This paper N/A
pLV-RETGRB2-K758M-HA This paper N/A

Software and algorithms

Spliced Transcripts Alignment to a Reference (STAR) Dobin et al., 201326 http://code.google.com/p/rna-star/
HTSeq v.0.6.1 Putri et al., 202127 http://www-huber.embl.de/HTSeq
Gene Set Enrichment Analysis (GSEA) Subramanian et al., 200528 https://www.gsea-msigdb.org/gsea/index.jsp
ImageJ Abramoff et al., 201229 https://imagej.nih.gov/ij/
MiSeq Illumina https://www.illumina.com/systems/sequencing-platforms/miseq.html