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. 2022 May 21;16(9):2065–2075. doi: 10.1038/s41396-022-01252-5

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — Weighted UniFrac distance compared to (A) rRNA gene copies, (B) Gas production, (C) Pathogen to fermenter log ratio, (D) Shannon index. Individual points are colored by antibiotic treatment (n = 11). Observed outcomes (Community resistance, community death, pathogen death, anaerobe death, niche replacement, and release of community level inhibition) are highlighted via large cogs on each of the panels colored by the outcome they represent. These highlighted regions are meant to aid in visualization of their presence in the overlying data. Cutoff values of for the outcomes are further described in Table S17.