Table 2.
Identified genes with high level expression from RNA-seq data.
| Gene | Promoter | Downstream product | Average FPKM |
|---|---|---|---|
| ahpC | 1 | Alkyl hydroperoxide reductase | 3612.45 |
| clpP | 2 | ATP-dependent Clp protease | 1151.7725 |
| cpxP | 3 | Cpx response inhibitor | 1919.7225 |
| cspC | 4 | Stress protein, member of the CspA-family | 8650.905 |
| eno | 5 | Enolase | 1959.8025 |
| ftsZ | 6 | Cell division protein FtsZ | 1703.47 |
| gltA | 7 | Citrate synthase | 12997.47 |
| lpp | 8 | Murein lipoprotein | 6366.5075 |
| lpxC | 9 | UDP-3-O-acyl N-acetylglucosamine deacetylase | 2541.38 |
| nlpI | 10 | Lipoprotein | 1242.08 |
| ompA | 11 | Outer membrane protein A | 21640.7025 |
| ompC | 12 | Outer membrane porin protein C | 4732.635 |
| ompN | 13 | Outer membrane pore protein | 10778.6525 |
| ompW | 14 | Outer membrane protein W | 5126.42 |
| ompX | 15 | Outer membrane protein X | 6679.55 |
| raiA | 16 | Cold shock protein | 9965.2425 |
| rplJ | 17 | 50S ribosomal subunit protein L10 | 5684.93 |
| rpoB | 18 | RNA polymerase, beta subunit | 1454.715 |
| rpoH | 19 | RNA polymerase, sigma H factor | 1774.61 |
| rpsA | 20 | 30S ribosomal subunit protein S1 | 2618.3375 |
| rpsF | 21 | 30S ribosomal subunit protein S6 | 5404.0175 |
| rpsM | 22 | 30S ribosomal subunit protein S13 | 5304.5475 |
| SMWW4_v1c12140 | 23 | Hypothetical protein | 1975.2125 |
| SMWW4_v1c29250 | 24 | Hypothetical protein | 2818.635 |
| sodB | 25 | Superoxide dismutase | 2468.105 |
| tpiA | 26 | Triosephosphate isomerase | 2013.625 |
| trxA | 27 | Thioredoxin 1 | 1508.045 |
| uspG | 28 | Universal stress protein UP12 | 1753.1375 |
| ybaY | 29 | Outer membrane lipoprotein | 8141.1775 |
| yccA | 30 | HflBKC-binding inner membrane protein | 1318.955 |
| yfiD | 31 | Autonomous glycyl radical cofactor | 3249.205 |
| ygdI | 32 | Putative lipoprotein | 2606.52 |