Table 3.
Reactions and kinetic parameters
| # | Reaction | Rate constants | Value | References |
|---|---|---|---|---|
| 1 | cAMP AMP | kon,PDE | 0.15 μM−1 s−1 | (54) |
| 2 | 2PKAcat + 2PKAreg PKA | kon,PKA | 10 μM−3 s−1 | estimated |
| koff,PKA | 6 × 10−4 s−1 | |||
| 3 | PKA + 4cAMP C1 | kon,C1 | 0.0261 s−1 | (49,55) |
| km,PKA | 5.2 μM | |||
| 4 | C1 2PKAcat,1 + 2PKAreg + 4cAMP | kdeg | 0.21 s−1 | (32) |
| 5 | PKA cat,1 PKAcat | kdeg,1 | 0.0051 s−1 | (49) |
| 6 | Epac + cAMP Epacon | kon,Epac | 0.031 s−1 (estimated) | (49,56) |
| koff, Epac | 0.00651 s−1 | |||
| km,Epac | 30 μM | |||
| 7 | Epacon + RAP1GDP RAP1GTP | kon,RAP1 | 0.05 μM−1 s−1 (estimated) | (52) |
| koff,RAP1 | 1.166 10−4 s−1 | |||
| 8 | RAP1GTP + ERK ppERK | kon,ERK | 0.88 μM−1 s−1 | (57,58) |
| koff,ERK | 0.088 s−1 | |||
| 9 | ppERK + ppERK ERKdimer | kon,dimer | 0.2 μM−1 s−1 | estimated based on Kd = 7.5 nM (59) |
| koff, dimer | 0.0015 s−1 |