TABLE 1.

Characteristics of the datasets used for the large-scale acquisition of differentially expressed genes (DEGs) andmicroRNAs (miRs) in thyroid cancers.

	GSE accession	GPL	THCA	Normal	Release date	References
1	GSE3467	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	9	7	Dec 19, 2005	He et al. (2005)
2	GSE3678	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	7	7	Jun 30, 2006
3	GSE33630	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	60	45	Nov 09, 2012	Tomás et al. (2012)
4	GSE58545	GPL96 (HG-U133A) Affymetrix human genome U133A array	27	18	Dec 31, 2015	Rusinek et al. (2015)
5	GSE65144	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	12	13	Jan 22, 2015	von Roemeling et al. (2015)
6	GSE29265	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	29	20	Jun 01, 2012
7	GSE53072	GPL6244	3	3	Dec 07, 2013	Pita et al. (2014)
8	GSE35570	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	65	51	Dec 31, 2015	Handkiewicz-Junak et al. (2016)
9	GSE60542	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	58	32	Sep 01, 2015	Tarabichi et al. (2015)
10	GSE29315	GPL8300 (HG_U95Av2) Affymetrix human genome U95 version 2 array	31	25	Jun 01, 2012
11	GSE6004	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	14	4	Oct 11, 2006	Vasko et al. (2007)
12	GSE27155	GPL96 (HG-U133A) Affymetrix human genome U133A array	95	4	Feb 09, 2011	Giordano et al. (2006)
13	GSE9115	GPL5917 (human 12K cDNA clones, print AgB3)	15	5	Sep 21, 2007	Salvat ore et al. (2007)
14	GSE82208	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	27	25	Jun 03, 2017
15	GSE129562	GPL10558 (Illumina Human) HT-12 V4.0 expression beadchip	8	8	Nov 12, 2019	Lee et al. (2019)
16	GSE85457	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	4	3	Nov 30, 2016
17	GSE5364	GPL96 (HG-U133A) Affymetrix human genome U133A array	35	16	Jul 23, 2008	Yu et al. (2008)
18	GSE53157	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	24	3	Dec 10, 2013	Pita et al. (2009)
19	GSE58546	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	10	10	Dec 31, 2015	Rusinek et al. (2015)
20	GSE53050	GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array	3	3	Dec 31, 2015	Reeb and Reigh-Yi (2015)
21	GSE50901	GPL13607 (Agilent-028004 surePrint G3 human GE 8 × 60 K microarray]	61	4	Nov 01, 2014	Barro s-Filho et al. (2020)
22	GSE15045	GPL2986 (ABI human genome survey microarray version 2)	8	4	Feb 28, 2009	Hinsch et al. (2009)
23	GSE73182	GPL20194: Agilent-035758 human miRBASE 16.0 plus 031181	16	5	Nov 01, 2016	Minna et al. (2016)
24	GSE97070	GPL18402: Agilent-046064 human_miRNA_V19.0	17	3	Mar 01, 2018	Romeo et al. (2018)
25	GSE40807	GPL:Agilent-019118 human miRNA microarray 2.0 G4470B	40	40	Dec 15, 2014	Lassalle et al. (2016)
26	GSE151180	GPL21575:Agilent-070156 human_miRNA_V21.0_microarray 046064	16	11	May 17, 2021	Colombo et al. (2020)
27	GSE104006	GPL20194: Agilent-035758 human miRBASE 16.0 plus 031181	29	5	Sep 30, 2020	Minna et al. (2020)