TABLE 1.
Characteristics of the datasets used for the large-scale acquisition of differentially expressed genes (DEGs) andmicroRNAs (miRs) in thyroid cancers.
| GSE accession | GPL | THCA | Normal | Release date | References | |
|---|---|---|---|---|---|---|
| 1 | GSE3467 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 9 | 7 | Dec 19, 2005 | He et al. (2005) |
| 2 | GSE3678 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 7 | 7 | Jun 30, 2006 | |
| 3 | GSE33630 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 60 | 45 | Nov 09, 2012 | Tomás et al. (2012) |
| 4 | GSE58545 | GPL96 (HG-U133A) Affymetrix human genome U133A array | 27 | 18 | Dec 31, 2015 | Rusinek et al. (2015) |
| 5 | GSE65144 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 12 | 13 | Jan 22, 2015 | von Roemeling et al. (2015) |
| 6 | GSE29265 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 29 | 20 | Jun 01, 2012 | |
| 7 | GSE53072 | GPL6244 | 3 | 3 | Dec 07, 2013 | Pita et al. (2014) |
| 8 | GSE35570 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 65 | 51 | Dec 31, 2015 | Handkiewicz-Junak et al. (2016) |
| 9 | GSE60542 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 58 | 32 | Sep 01, 2015 | Tarabichi et al. (2015) |
| 10 | GSE29315 | GPL8300 (HG_U95Av2) Affymetrix human genome U95 version 2 array | 31 | 25 | Jun 01, 2012 | |
| 11 | GSE6004 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 14 | 4 | Oct 11, 2006 | Vasko et al. (2007) |
| 12 | GSE27155 | GPL96 (HG-U133A) Affymetrix human genome U133A array | 95 | 4 | Feb 09, 2011 | Giordano et al. (2006) |
| 13 | GSE9115 | GPL5917 (human 12K cDNA clones, print AgB3) | 15 | 5 | Sep 21, 2007 | Salvat ore et al. (2007) |
| 14 | GSE82208 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 27 | 25 | Jun 03, 2017 | |
| 15 | GSE129562 | GPL10558 (Illumina Human) HT-12 V4.0 expression beadchip | 8 | 8 | Nov 12, 2019 | Lee et al. (2019) |
| 16 | GSE85457 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 4 | 3 | Nov 30, 2016 | |
| 17 | GSE5364 | GPL96 (HG-U133A) Affymetrix human genome U133A array | 35 | 16 | Jul 23, 2008 | Yu et al. (2008) |
| 18 | GSE53157 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 24 | 3 | Dec 10, 2013 | Pita et al. (2009) |
| 19 | GSE58546 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 10 | 10 | Dec 31, 2015 | Rusinek et al. (2015) |
| 20 | GSE53050 | GPL570 (HG-U133_Plus_2) Affymetrix human genome U133 plus 2.0 array | 3 | 3 | Dec 31, 2015 | Reeb and Reigh-Yi (2015) |
| 21 | GSE50901 | GPL13607 (Agilent-028004 surePrint G3 human GE 8 × 60 K microarray] | 61 | 4 | Nov 01, 2014 | Barro s-Filho et al. (2020) |
| 22 | GSE15045 | GPL2986 (ABI human genome survey microarray version 2) | 8 | 4 | Feb 28, 2009 | Hinsch et al. (2009) |
| 23 | GSE73182 | GPL20194: Agilent-035758 human miRBASE 16.0 plus 031181 | 16 | 5 | Nov 01, 2016 | Minna et al. (2016) |
| 24 | GSE97070 | GPL18402: Agilent-046064 human_miRNA_V19.0 | 17 | 3 | Mar 01, 2018 | Romeo et al. (2018) |
| 25 | GSE40807 | GPL:Agilent-019118 human miRNA microarray 2.0 G4470B | 40 | 40 | Dec 15, 2014 | Lassalle et al. (2016) |
| 26 | GSE151180 | GPL21575:Agilent-070156 human_miRNA_V21.0_microarray 046064 | 16 | 11 | May 17, 2021 | Colombo et al. (2020) |
| 27 | GSE104006 | GPL20194: Agilent-035758 human miRBASE 16.0 plus 031181 | 29 | 5 | Sep 30, 2020 | Minna et al. (2020) |