Table 2.
Comparison of structural homology of ASADH proteins to P. aeruginosa ASADH (5BNT) and N. gonorrhoeae ASADH (6BAC).
| PDB ID | z | RMSD | LALI | %ID | Nres | Organism | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| 5BNT | 6BAC | 5BNT | 6BAC | 5BNT | 6BAC | 5BNT | 6BAC | |||
| 6BAC | 55.9 | – | 0.8 | – | 371 | – | 68 | – | 371 | N. gonorrhoeae |
| 3PZR | 57.2 | 55.7 | 0.5 | 0.8 | 369 | 370 | 69 | 66 | 371 | V. cholerae |
| 3UW3 | 56.1 | 56.1 | 0.8 | 0.7 | 370 | 370 | 73 | 71 | 375 | B. thailandensis |
| 1PQU | 56.0 | 54.5 | 0.6 | 0.9 | 369 | 369 | 67 | 66 | 372 | H. influenzae |
| 1GL3 | 53.5 | 50.7 | 1.1 | 0.8 | 367 | 355 | 69 | 66 | 368 | E. coli |
| 4WOJ | 52.2 | 51.0 | 1.3 | 1.5 | 363 | 362 | 51 | 46 | 365 | F. tularensis subsp. Tularensis |
| 2GYY | 39.9 | 39.3 | 2.0 | 2.1 | 332 | 330 | 23 | 23 | 352 | S. pneumoniae |
| 3TZ6 | 39.2 | 38.3 | 2.2 | 2.4 | 335 | 335 | 25 | 24 | 343 | M. tuberculosis H37Rv |
| 2YV3 | 38.7 | 37.6 | 2.2 | 2.3 | 325 | 322 | 29 | 27 | 328 | T. thermophilus HB8 |
| 1YS4 | 31.9 | 30.8 | 2.8 | 2.9 | 304 | 302 | 20 | 22 | 348 | M. jannaschii |
| 4ZIC | 31.6 | 30.7 | 2.6 | 2.8 | 303 | 302 | 19 | 21 | 357 | T. rubrum |
| 5JW6 | 31.3 | 30.9 | 2.7 | 2.9 | 302 | 304 | 21 | 20 | 358 | A. fumigatus |
| 6C85 | 31.0 | 30.5 | 2.7 | 2.8 | 303 | 302 | 18 | 20 | 354 | B. dermatitidis |
| 5CEF | 29.9 | 28.8 | 2.5 | 2.7 | 301 | 300 | 20 | 21 | 359 | C. neoformans |
| 3HSK | 29.4 | 28.7 | 2.8 | 2.8 | 299 | 358 | 20 | 19 | 358 | C. albicans |
Z z-score confidence in similarity significance, RMSD Root mean square deviation across the aligned sequences, LALI Total number of aligned residues, Nres Total number of residues, %ID Percent identity. PDB structures listed below the line were limited to 1 structure per species.