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. 2022 Jul 19;25(8):104777. doi: 10.1016/j.isci.2022.104777
REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited data

Bulk RNA-seq and clinical data for TCGA cohort TCGA https://gdc.cancer.gov/about-data/publications/pancanatlas
Bulk RNA-seq and clinical data for ICGC cohort ICGC https://dcc.icgc.org
Liver hepatocellular carcinoma ATAC-seq data Grubert et al., 2020 GSE139099
Colorectal cancer ATAC-seq data Lee et al., 2020 EGAS00001003779,EGAS00001003769
LIHC and COAD scRNA-seq data Expression Atlas https://www.ebi.ac.uk/gxa/home

Software and algorithms

R version 4.0.3 https://www.r-project.org/ https://www.r-project.org/
ggpubr_0.4.0 github https://github.com/kassambara/ggpubr
ggcorrplot_0.1.3 github https://github.com/kassambara/ggcorrplot
survival_3.2-7 github https://github.com/therneau/survival
limma_3.46.0 github https://github.com/cran/limma