REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
Bulk RNA-seq and clinical data for TCGA cohort | TCGA | https://gdc.cancer.gov/about-data/publications/pancanatlas |
Bulk RNA-seq and clinical data for ICGC cohort | ICGC | https://dcc.icgc.org |
Liver hepatocellular carcinoma ATAC-seq data | Grubert et al., 2020 | GSE139099 |
Colorectal cancer ATAC-seq data | Lee et al., 2020 | EGAS00001003779,EGAS00001003769 |
LIHC and COAD scRNA-seq data | Expression Atlas | https://www.ebi.ac.uk/gxa/home |
Software and algorithms | ||
R version 4.0.3 | https://www.r-project.org/ | https://www.r-project.org/ |
ggpubr_0.4.0 | github | https://github.com/kassambara/ggpubr |
ggcorrplot_0.1.3 | github | https://github.com/kassambara/ggcorrplot |
survival_3.2-7 | github | https://github.com/therneau/survival |
limma_3.46.0 | github | https://github.com/cran/limma |