Table 2.
120 transcripts that significantly increased in abundance upon submergence in Mougeotia sp. MZCH 240
| Mousp ID | Best A.t. hit | Annotation | log2(FC) | FDR |
|---|---|---|---|---|
| Mousp14158_c0_g1_i8 | AT1G16540 | molybdenum cofactor sulfurase (LOS5) (ABA3) | 7.27520966 | 8.0067E-24 |
| Mousp17078_c0_g3_i2 | AT3G14840 | Leucine-rich repeat transmembrane protein kinase | 6.50770827 | 3.1038E-22 |
| Mousp17366_c0_g1_i1 | AT1G70860 | polyketide cyclase/dehydrase and lipid transport | 5.97865925 | 1.8507E-17 |
| Mousp12113_c0_g1_i4 | AT5G02290 | protein kinase superfamily protein | 5.60368112 | 9.185E-29 |
| Mousp17366_c0_g3_i1 | AT1G23360 | S-adenosyl-l-methionine-dependent methyltransferases | 5.40238661 | 9.7774E-09 |
| Mousp17745_c1_g1_i11 | AT1G36160 | acetyl-CoA carboxylase 1 | 5.37604779 | 4.3006E-25 |
| Mousp17215_c0_g5_i2 | AT1G32500 | non-intrinsic ABC protein 6 | 4.89640786 | 3.5159E-10 |
| Mousp13170_c0_g1_i1 | AT1G12580 | phosphoenolpyruvate carboxylase-related kinase 1 | 4.84629602 | 8.928E-17 |
| Mousp17366_c0_g2_i3 | AT1G08990 | plant glycogenin-like starch initiation protein 5 | 4.80921473 | 1.6156E-11 |
| Mousp15175_c0_g2_i6 | AT5G26130 | Cysteine-rich secretory, Antigen 5, and Pathogenesis-related 1 | 4.76084995 | 9.7774E-09 |
| Mousp14442_c0_g1_i1 | AT3G60270 | Cupredoxin superfamily protein | 4.52531814 | 1.3694E-09 |
| Mousp15384_c0_g2_i2 | AT4G34990 | myb domain protein 32 | 4.09225758 | 4.8567E-33 |
| Mousp17772_c0_g1_i14 | AT4G11050 | glycosyl hydrolase 9C3 | 3.99810327 | 2.8402E-10 |
| Mousp16800_c0_g1_i6 | AT1G67490 | glucosidase 1 | 3.81940181 | 1.062E-13 |
| Mousp17501_c0_g1_i5 | AT3G14920 | Peptide-N4-(N-acetyl-beta-glucosaminyl) asparagine amidase A | 3.7028685 | 1.4233E-09 |
| Mousp17241_c0_g1_i6 | AT1G16650 | S-adenosyl-l-methionine-dependent methyltransferases | 3.54376221 | 2.6424E-07 |
| Mousp16885_c0_g1_i12 | AT3G58450 | Adenine nucleotide alpha hydrolases-like | 3.43211036 | 3.7452E-12 |
| Mousp14398_c0_g1_i5 | AT3G63520 | carotenoid cleavage dioxygenase 1 | 3.40138953 | 0.00008287 |
| Mousp17219_c4_g1_i2 | AT5G26150 | protein kinase family protein | 3.27932949 | 2.8364E-10 |
| Mousp12560_c0_g1_i2 | AT2G35890 | calcium-dependent protein kinase 25 | 3.2585986 | 1.3769E-06 |
| Mousp13723_c0_g1_i1 | AT5G45890 | senescence-associated gene 12 | 3.24606174 | 2.5541E-09 |
| Mousp17422_c0_g1_i1 | AT4G11050 | glycosyl hydrolase 9C3 | 3.22808696 | 0.000010803 |
| Mousp17708_c0_g2_i11 | AT3G02130 | receptor-like protein kinase 2 | 3.18914671 | 0.000023637 |
| Mousp15137_c0_g1_i4 | AT2G42450 | alpha/beta-Hydrolases superfamily protein | 3.10782404 | 4.3225E-13 |
| Mousp13988_c0_g1_i5 | none | none | 3.10330699 | 6.974E-15 |
| Mousp16061_c0_g3_i2 | AT1G16250 | Galactose oxidase/kelch repeat | 3.06024435 | 1.1042E-16 |
| Mousp16214_c0_g1_i1 | AT2G44740 | cyclin | 3.05199502 | 2.5095E-15 |
| Mousp14673_c1_g1_i14 | AT1G66970 | SHV3-like 2 | 2.98725544 | 2.3537E-07 |
| Mousp17516_c0_g3_i2 | AT4G20140 | Leucine-rich repeat transmembrane protein kinase | 2.93958975 | 2.9611E-09 |
| Mousp17666_c0_g1_i1 | AT5G20520 | alpha/beta-Hydrolases superfamily protein | 2.89768053 | 1.0882E-06 |
| Mousp16146_c1_g1_i34 | AT1G55960 | Polyketide cyclase/dehydrase and lipid transport | 2.89145041 | 5.3538E-08 |
| Mousp15641_c0_g6_i2 | AT2G32415 | Polynucleotidyl transferase, ribonuclease H with HRDC domain | 2.78988514 | 9.3814E-07 |
| Mousp15363_c0_g1_i15 | AT5G58140 | phototropin 2 | 2.75782905 | 2.2375E-07 |
| Mousp16839_c0_g1_i4 | AT1G19660 | Wound-responsive family protein | 2.75208096 | 0.000021332 |
| Mousp16811_c0_g3_i2 | AT2G40610 | expansin A8 | 2.73396604 | 0.00082134 |
| Mousp13223_c0_g1_i6 | AT4G18910 | NOD26-like intrinsic protein 1%3B2 | 2.7251728 | 1.2886E-10 |
| Mousp15049_c1_g5_i1 | AT2G21320 | B-box zinc finger family protein | 2.68212139 | 7.8998E-14 |
| Mousp15748_c2_g2_i3 | AT3G19430 | late embryogenesis abundant | 2.66385694 | 3.9849E-08 |
| Mousp16895_c0_g1_i9 | AT3G19400 | Cysteine proteinases superfamily protein | 2.52775348 | 0.00051691 |
| Mousp17457_c0_g2_i6 | AT3G63190 | ribosome recycling factor, chloroplast precursor | 2.52623134 | 3.4766E-12 |
| Mousp16770_c0_g2_i2 | AT2G34430 | light-harvesting chlorophyll-protein complex II subunit B1 | 2.52608987 | 0.00040624 |
| Mousp17814_c0_g1_i1 | AT3G12490 | cystatin B | 2.51128417 | 3.9795E-09 |
| Mousp15345_c0_g4_i4 | AT3G22850 | aluminum induced protein with YGL and LRDR motifs | 2.49160672 | 8.5789E-07 |
| Mousp16831_c0_g1_i5 | AT4G08850 | Leucine-rich repeat receptor-like protein kinase | 2.47066699 | 2.3962E-07 |
| Mousp12430_c0_g1_i4 | AT4G37260 | myb domain protein 73 | 2.44626078 | 2.1144E-07 |
| Mousp17048_c2_g5_i2 | AT4G22830 | YCF49-like protein | 2.43736515 | 1.4633E-09 |
| Mousp13966_c0_g1_i1 | AT3G16830 | TOPLESS-related 2 | 2.42899009 | 2.509E-07 |
| Mousp12564_c0_g1_i1 | AT3G53000 | phloem protein 2-A15 | 2.4230952 | 3.8864E-10 |
| Mousp15097_c0_g1_i4 | AT2G43560 | FKBP-like peptidyl-prolyl cis-trans isomerase | 2.42256699 | 1.2101E-10 |
| Mousp15383_c0_g1_i2 | AT1G09740 | Adenine nucleotide alpha hydrolases-like | 2.39874357 | 0.00028434 |
| Mousp17870_c0_g2_i4 | AT2G46580 | Pyridoxamine 5′-phosphate oxidase | 2.39561141 | 1.7197E-12 |
| Mousp15748_c2_g3_i4 | AT3G19430 | late embryogenesis abundant | 2.39052414 | 5.2306E-08 |
| Mousp17536_c0_g2_i15 | AT4G16760 | acyl-CoA oxidase 1 | 2.37665903 | 0.000010184 |
| Mousp17563_c0_g2_i4 | AT1G13980 | sec7 domain-containing protein | 2.36154393 | 0.00012739 |
| Mousp17005_c2_g1_i2 | AT5G54370 | late embryogenesis abundant | 2.34756478 | 0.000050599 |
| Mousp17009_c0_g2_i11 | AT4G33010 | glycine decarboxylase P-protein 1 | 2.34716303 | 0.000027572 |
| Mousp13949_c0_g1_i1 | AT5G19360 | calcium-dependent protein kinase 34 | 2.3443775 | 0.00023592 |
| Mousp14435_c0_g1_i1 | AT3G22750 | Protein kinase superfamily protein | 2.29061994 | 1.2152E-11 |
| Mousp16006_c1_g2_i6 | AT2G15010 | Plant thionin | 2.28071231 | 0.000001202 |
| Mousp17583_c1_g1_i5 | AT1G08550 | non-photochemical quenching 1 | 2.26244193 | 6.0714E-06 |
| Mousp17901_c2_g2_i8 | AT5G14580 | polyribonucleotide nucleotidyltransferase | 2.24801086 | 0.00008991 |
| Mousp15753_c0_g1_i21 | AT2G34260 | transducin family protein / WD-40 repeat | 2.24643147 | 7.4559E-07 |
| Mousp15748_c2_g4_i7 | AT3G19430 | late embryogenesis abundant | 2.24637151 | 6.5626E-06 |
| Mousp15175_c0_g1_i6 | AT2G14610 | pathogenesis-related protein 1 | 2.24594398 | 0.000030745 |
| Mousp17901_c2_g3_i1 | none | none | 2.24550218 | 0.000023275 |
| Mousp16876_c0_g5_i2 | AT3G52140 | tetratricopeptide repeat (TPR)-containing protein | 2.22759061 | 0.000030632 |
| Mousp17754_c1_g2_i1 | AT5G41460 | transferring glycosyl group transferase (DUF604) | 2.22550195 | 1.2101E-10 |
| Mousp10496_c0_g1_i1 | AT4G33880 | ROOT HAIR DEFECTIVE 6-LIKE 2 | 2.21640294 | 7.7321E-10 |
| Mousp14422_c0_g1_i6 | AT1G14870 | PLANT CADMIUM RESISTANCE 2 | 2.21344381 | 8.4799E-06 |
| Mousp13841_c0_g1_i3 | AT2G24440 | selenium binding protein | 2.1868762 | 1.7433E-10 |
| Mousp17685_c0_g1_i2 | AT4G00260 | Transcriptional factor B3 family protein | 2.173197 | 0.00032902 |
| Mousp17103_c0_g2_i3 | AT2G37560 | origin recognition complex second largest subunit 2 | 2.15944614 | 0.000088228 |
| Mousp14784_c2_g1_i6 | AT2G21940 | shikimate kinase 1 | 2.14189653 | 4.7278E-09 |
| Mousp16295_c0_g1_i5 | AT1G31420 | Leucine-rich repeat protein kinase | 2.14136017 | 0.00020268 |
| Mousp17228_c0_g3_i14 | AT2G25185 | Defensin-like (DEFL) family protein | 2.13194267 | 0.00075013 |
| Mousp14776_c0_g1_i2 | AT5G15330 | SPX domain-containing protein 4 | 2.12256734 | 3.8238E-10 |
| Mousp15459_c0_g2_i1 | AT1G44575 | Chlorophyll A-B binding family protein | 2.11945161 | 1.1268E-07 |
| Mousp17556_c0_g1_i6 | AT5G64290 | dicarboxylate transport 2.1 | 2.11755201 | 0.00092571 |
| Mousp16715_c1_g1_i6 | AT2G33855 | transmembrane protein | 2.06354721 | 7.3282E-09 |
| Mousp12292_c0_g1_i2 | AT5G09650 | pyrophosphorylase 6 | 2.02084136 | 1.0549E-06 |
| Mousp15459_c0_g3_i1 | AT1G44575 | Chlorophyll A-B binding family protein | 2.01519992 | 2.6424E-07 |
| Mousp11032_c0_g1_i1 | AT2G36930 | zinc finger (C2H2 type) family protein | 1.99550424 | 3.5079E-07 |
| Mousp15459_c1_g1_i1 | AT1G44575 | Chlorophyll A-B binding family protein | 1.96857574 | 1.5821E-06 |
| Mousp11772_c0_g1_i3 | AT1G22170 | Phosphoglycerate mutase family protein | 1.96630859 | 1.2869E-06 |
| Mousp17393_c0_g3_i1 | AT2G40490 | Uroporphyrinogen decarboxylase | 1.94764795 | 0.000013015 |
| Mousp15227_c0_g1_i2 | AT5G65230 | myb domain protein 53 | 1.94157129 | 1.3559E-06 |
| Mousp16477_c0_g4_i7 | AT5G52975 | egg cell-secreted-like protein (DUF1278) | 1.92832108 | 0.00010985 |
| Mousp15882_c0_g1_i1 | AT2G19540 | Transducin family protein / WD-40 repeat family protein | 1.92449346 | 0.00096677 |
| Mousp16664_c0_g3_i1 | AT3G12410 | Polynucleotidyl transferase, ribonuclease H-like | 1.91165287 | 0.00028833 |
| Mousp16466_c0_g1_i3 | AT2G35120 | Single hybrid motif superfamily protein | 1.82700212 | 1.5271E-06 |
| Mousp15769_c0_g1_i1 | AT4G24230 | acyl-CoA-binding domain 3 | 1.8206261 | 0.00013362 |
| Mousp16717_c0_g1_i10 | AT3G19430 | late embryogenesis abundant | 1.82053718 | 0.00022751 |
| Mousp17443_c0_g1_i9 | AT4G35000 | ascorbate peroxidase 3 | 1.81353441 | 2.5071E-07 |
| Mousp12426_c0_g1_i4 | AT5G22140 | FAD/NAD(P)-binding oxidoreductase family protein | 1.79593008 | 0.00026667 |
| Mousp15265_c0_g1_i8 | AT5G02160 | transmembrane protein | 1.73674051 | 0.00003623 |
| Mousp14642_c0_g1_i3 | AT4G15520 | tRNA/rRNA methyltransferase (SpoU) family protein | 1.73401135 | 0.00087276 |
| Mousp12053_c0_g1_i1 | AT5G49300 | GATA transcription factor 16 | 1.70744995 | 0.000012895 |
| Mousp17024_c0_g1_i31 | AT1G29900 | carbamoyl phosphate synthetase B | 1.69430823 | 0.00029494 |
| Mousp14546_c0_g1_i2 | AT5G48300 | ADP glucose pyrophosphorylase 1 | 1.67256288 | 0.000055648 |
| Mousp16932_c4_g2_i3 | AT1G78430 | ROP interactive partner 2 | 1.67009459 | 0.00026667 |
| Mousp17693_c0_g2_i9 | AT5G04270 | DHHC-type zinc finger family protein | 1.6547086 | 0.000030487 |
| Mousp15496_c2_g7_i4 | AT1G20140 | SKP1-like 4 | 1.63691483 | 0.00012795 |
| Mousp14376_c0_g1_i13 | AT3G21150 | B-box 32 | 1.62615568 | 0.00022751 |
| Mousp16045_c0_g1_i2 | AT5G13680 | IKI3 family protein | 1.61640969 | 0.000031256 |
| Mousp17530_c2_g2_i38 | AT3G63380 | ATPase E1-E2 / haloacid dehalogenase-like hydrolase | 1.61216412 | 0.00086341 |
| Mousp13515_c0_g1_i2 | AT5G12180 | calcium-dependent protein kinase 17 | 1.60553028 | 0.000012596 |
| Mousp17689_c0_g1_i7 | AT4G30990 | ARM repeat superfamily protein | 1.59876228 | 0.00092316 |
| Mousp10275_c0_g1_i1 | AT4G14890 | 2Fe-2S ferredoxin-like superfamily protein | 1.58967395 | 0.0003602 |
| Mousp17110_c0_g2_i14 | AT3G05060 | NOP56-like pre RNA processing ribonucleoprotein | 1.51185847 | 0.00051743 |
| Mousp16289_c1_g3_i6 | AT3G45190 | SIT4 phosphatase-associated family protein | 1.51073535 | 0.00052452 |
| Mousp13265_c0_g1_i2 | AT1G13580 | LAG1 longevity assurance-like protein | 1.47973166 | 0.000049111 |
| Mousp17103_c0_g1_i2 | AT5G48630 | Cyclin family protein | 1.45228723 | 0.00043854 |
| Mousp15997_c0_g1_i6 | AT5G37850 | pfkB-like carbohydrate kinase family protein | 1.45112666 | 0.00029494 |
| Mousp15166_c1_g3_i2 | AT4G27600 | pfkB-like carbohydrate kinase family protein | 1.44542141 | 0.00037996 |
| Mousp17238_c0_g3_i3 | AT3G43520 | Transmembrane proteins 14C | 1.36066059 | 0.00067169 |
| Mousp16518_c0_g3_i2 | AT4G23890 | NAD(P)H-quinone oxidoreductase subunit S | 1.35071287 | 0.00040989 |
| Mousp17358_c1_g1_i9 | AT3G04460 | peroxin-12 | 1.3027287 | 0.00081849 |
| Mousp17756_c0_g1_i13 | AT4G22890 | PGR5-LIKE A | 1.30095184 | 0.0007896 |
| Mousp13036_c1_g1_i1 | AT4G29350 | profilin 2 | 1.2830376 | 0.00092482 |
| Mousp17102_c1_g1_i1 | AT3G61070 | peroxin 11E | 1.26175474 | 0.00093898 |
Differential changes in transcript abundance (FC, fold change) in the samples taken 4h after submergence in liquid medium were calculated versus solid control and log2-transformed using edgeR; FDR false discovery rate denotes Benjamini-Hochberg-corrected p values; A.t. Arabidopsis thaliana