Table 1.

Utilized gene expression microarrays/RNA-sequencing for the differential gene expression analysis of the target genes of heterogeneous ASD.

Methylome data				Transcriptome data
ProbeID	Subfamiliy	Delta	PFDR	GSE	Gene ID	Gene	log2FC	q-value
cg13916261	AluSg	− 0.100	1.05E–04	GSE59288	23,048	FNBP1	0.354	0.013
cg13916261	AluSg	− 0.100	1.05E–04	GSE42133	ILMN_1797342	FNBP1	0.156	0.000
cg16926147	AluSg7	0.062	1.31E–04	GSE18123	206573_at	KCNQ3	− 0.093	0.018
cg16926147	AluSg7	0.062	1.31E–04	GSE59288	3786	KCNQ3	− 0.634	0.000
cg08998414	AluY	− 0.106	1.85E–04	GSE64018	ENSG00000186591	UBE2H	0.130	0.035
cg08998414	AluY	− 0.106	1.85E–04	GSE42133	ILMN_1757644	UBE2H	0.126	0.026
cg08998414	AluY	− 0.106	1.85E–04	GSE25507	222419_x_at	UBE2H	0.171	0.023
cg23416909	L1M5	− 0.104	3.44E–04	GSE18123	206405_x_at	USP6	0.233	< 0.001
cg23416909	L1M5	− 0.104	3.44E–04	GSE59288	9098	USP6	0.614	< 0.001
cg12611243	L1MC1	0.051	2.43E–03	GSE59288	3340	NDST1	− 0.231	0.050
cg12611243	L1MC1	0.051	2.43E–03	GSE18123	1554010_at	NDST1	− 0.209	0.021
cg12611243	L1MC1	0.051	2.43E–03	GSE18123	202608_s_at	NDST1	− 0.275	0.029
cg24094412	L1PA3	0.023	7.01E–04	GSE59288	348,980	HCN1	− 0.428	0.002
cg24094412	L1PA3	0.023	7.01E–04	GSE18123	1562563_at	HCN1	− 0.315	0.041