Skip to main content
. 2022 Jul 11;11(8):e00387-22. doi: 10.1128/mra.00387-22

TABLE 1.

Genome statistics for 278 Salmonella enterica isolates recovered from Florida poultry litter between 2017 and 2018

Sample
ID		 Serotype No. of
contigs		 Total
length
(bp)		 N50 (bp) Genome
coverage
(×)		 No. of
reads		 GC
content
(%)		 No. of
genes		 SRA
accession no.		 GenBank
accession no.
CFSAN086184a Typhimurium 58 4,960,245 210,372 60 1,274,398 51.9 4,836 SRR12966968 AAXAED000000000
CFSAN086185a Typhimurium 63 4,993,312 207,748 70 1,490,216 51.6 4,873 SRR12966969 AAXAEC000000000
CFSAN086186a Typhimurium 62 4,965,133 208,660 68 1,422,766 51.7 4,847 SRR12967007 AAXACN000000000
CFSAN086187a Typhimurium 61 4,969,298 238,507 69 1,495,076 51.9 4,857 SRR13407536 AAYUGK000000000
CFSAN086188a Typhimurium 56 4,968,216 252,441 58 1,227,412 51.8 4,845 SRR12966373 AAXAEW000000000
CFSAN086189a Typhimurium 55 4,960,737 277,250 55 1,159,634 51.9 4,835 SRR12966160 AAXAFG000000000
CFSAN086190a Typhimurium 56 4,984,298 252,078 69 1,484,272 51.9 4,860 SRR12966159 AAXAFH000000000
CFSAN086191a Typhimurium 56 4,959,267 252,078 54 1,135,892 51.8 4,840 SRR12967104 AAXABQ000000000
CFSAN086192a Typhimurium 58 4,960,503 252,441 57 1,186,918 51.7 4,842 SRR12966771 AAXAEK000000000
CFSAN086193a Typhimurium 72 4,963,105 188,295 48 1,006,300 51.5 4,857 SRR12966970 AAXAEA000000000
CFSAN086194a Typhimurium 85 4,957,634 125,307 67 1,398,286 51.3 4,864 SRR12966965 AAXAEG000000000
CFSAN086195a Typhimurium 62 4,949,342 207,709 56 1,148,826 51.3 4,830 SRR12966136 AAXAGE000000000
CFSAN086196a Typhimurium 60 4,960,956 207,775 65 1,364,764 51.7 4,837 SRR12966120 AAXAGP000000000
CFSAN086197a Typhimurium 54 4,976,685 252,441 75 1,599,214 51.6 4,858 SRR12966775 AAXAEI000000000
CFSAN086198a Typhimurium 62 4,992,359 188,190 68 1,453,000 51.8 4,879 SRR12966967 AAXAEB000000000
CFSAN086199a Typhimurium 62 4,999,696 207,703 74 1,562,992 51.5 4,892 SRR12966971 AAXADZ000000000
CFSAN086200a Infantis 29 4,674,371 386,461 54 1,083,234 52.2 4,507 SRR12966964 AAXAEE000000000
CFSAN086201a Infantis 35 4,658,183 331,268 55 1,103,184 52.2 4,492 SRR12966776 AAXAEF000000000
CFSAN086202a Typhimurium 57 4,976,773 266,994 60 1,277,004 51.9 4,856 SRR12966773 AAXAEJ000000000
CFSAN086203a Typhimurium 53 4,967,765 266,994 64 1,357,986 52.0 4,853 SRR12967278 AAWZZD000000000
CFSAN086204a Typhimurium 53 5,017,894 238,507 105 2,310,200 52.1 4,912 SRR12967263 AAWZZQ000000000
CFSAN086205a Typhimurium 69 4,941,532 175,199 58 1,225,970 51.9 4,837 SRR12967264 AAWZZM000000000
CFSAN086206a Typhimurium 69 4,990,349 164,740 63 1,336,008 51.9 4,881 SRR12966774 AAXAEH000000000
CFSAN086207a Typhimurium 58 4,956,615 196,036 52 1,103,256 51.8 4,836 SRR12967243 AAXAAH000000000
CFSAN086208a Meleagridis 68 4,892,216 175,379 68 1,693,444 52.1 4,761 SRR13249475 AANZWF000000000
CFSAN086209a Meleagridis 53 4,878,085 171,637 63 2,050,792 52.1 4,727 SRR13249289 AAOPZO000000000
CFSAN086210a Meleagridis 50 4,920,962 255,454 77 1,700,962 52.1 4,757 SRR13620978 AAOKFR000000000
CFSAN086211a Meleagridis 43 4,941,138 464,936 92 2,063,372 51.7 4,774 SRR10827626 AAOQUH000000000
CFSAN086212a Muenster 53 4,736,397 206,375 90 1,980,158 51.8 4,737 SRR10827812 AANRLP000000000
CFSAN086213a Muenster 58 4,740,736 204,128 112 2,570,404 51.8 4,742 SRR10827768 AANQBK000000000
CFSAN086214a Meleagridis 39 4,858,500 398,044 118 2,840,042 51.8 4,803 SRR10854851 AAOKRJ000000000
CFSAN086215a Muenster 49 4,744,126 289,183 115 2,510,910 51.9 4,740 SRR10827772 AAPNFC000000000
CFSAN086220a Montevideo 45 4,668,348 297,131 125 2,608,992 51.9 4,613 SRR10827808 AAOKEZ000000000
CFSAN086221a Montevideo 40 4,684,616 355,176 115 2,490,240 51.9 4,625 SRR10827651 AAQAIZ000000000
CFSAN086222a Montevideo 43 4,671,158 276,958 105 2,255,084 52.0 4,610 SRR10827755 AAPYBM000000000
CFSAN086223a Montevideo 44 4,671,060 276,956 81 1,634,014 52.1 4,620 SRR10827636 AAOKEU000000000
CFSAN086224a Montevideo 42 4,687,041 276,950 68 1,395,922 51.8 4,634 SRR10827638 AAPYBN000000000
CFSAN086225a Montevideo 42 4,669,071 276,950 56 1,128,438 52.0 4,618 SRR10827759 AAOQRT000000000
CFSAN086226a Typhimurium 65 4,961,394 208,660 66 1,445,010 51.7 4,958 SRR10825162 AANUNY000000000
CFSAN086227a Typhimurium 66 4,948,547 186,164 52 1,096,686 51.8 4,942 SRR10825151 AAPRSR000000000
CFSAN086228a Typhimurium 58 4,950,141 252,441 80 1,787,080 51.6 4,942 SRR10827540 AAOQPT000000000
CFSAN086229a Typhimurium 55 4,951,744 252,441 86 1,914,304 51.6 4,938 SRR10827558 AAOKEL000000000
CFSAN086230a Muenster 47 4,718,427 282,249 90 1,893,766 51.6 4,700 SRR10827532 AANZLX000000000
CFSAN086231a Muenster 41 4,715,352 389,139 110 2,310,096 51.7 4,694 SRR10827535 AANVRB000000000
CFSAN086232a I –:z10:e,n,z15 35 4,698,550 320,992 123 2,584,818 51.9 4,649 SRR10825150 AAOPZC000000000
CFSAN086233a Mbandaka 34 4,665,901 276,631 99 2,045,486 52.0 4,598 SRR10824940 AANRJK000000000
CFSAN086234a Mbandaka 44 4,779,451 211,298 84 1,750,728 51.6 4,766 SRR10824941 AAOPZH000000000
CFSAN086235a Mbandaka 49 4,778,256 171,113 71 1,461,498 51.4 4,769 SRR10828022 AANVPP000000000
CFSAN086237a Typhimurium 52 5,002,540 282,036 75 1,614,482 52.0 4,881 SRR12820387 AAYEWC000000000
CFSAN086238a Mbandaka 63 4,986,886 139,409 125 2,678,228 51.9 4,850 SRR12898986 AAWRMT000000000
CFSAN086239a Mbandaka 41 5,111,037 276,631 100 2,177,498 52.1 4,947 SRR12898924 AAWRBX000000000
CFSAN086240a Typhimurium 55 5,082,684 252,441 118 2,564,296 52.1 4,973 SRR12903810 AAWREK000000000
CFSAN086241a Kentucky 75 5,167,973 148,261 106 2,342,264 51.8 5,005 SRR12903804 AAWRET000000000
CFSAN086242a Typhimurium 50 5,069,882 282,032 95 2,046,376 52.1 4,958 SRR12903790 AAWREU000000000
CFSAN086243a Typhimurium 52 5,024,860 252,441 78 1,687,286 52.1 4,908 SRR12903902 AAWRDX000000000
CFSAN086244a Typhimurium 56 5,043,717 249,800 88 1,876,570 52.0 4,939 SRR12903414 AAWRGN000000000
CFSAN086245a Typhimurium 55 5,076,714 252,441 98 2,098,848 52.1 4,965 SRR12903801 AAWRES000000000
CFSAN086246a Kentucky 95 5,164,887 116,362 106 2,352,648 51.4 5,016 SRR12903418 AAWRGG000000000
CFSAN086247a Kentucky 74 5,164,226 148,261 94 2,078,638 51.6 5,005 SRR12903318 AAWRHW000000000
CFSAN086248a Kentucky 70 5,163,787 235,822 99 2,161,438 51.8 4,998 SRR12903314 AAWRHB000000000
CFSAN086249a Typhimurium 51 5,166,447 282,032 98 2,153,578 52.1 5,050 SRR12901896 AAWRIQ000000000
CFSAN086250a Typhimurium 82 4,932,652 130,777 46 1,013,152 51.4 4,831 SRR10484704 AAPMVY000000000
CFSAN086251a Typhimurium 226 4,898,930 44,019 35 733,860 51.3 4,930 SRR10483541 AAQPSA000000000
CFSAN086252a Kentucky 146 4,980,657 81,147 36 758,372 51.6 4,891 SRR10484068 AAQHJE000000000
CFSAN086253a Kentucky 90 4,989,170 118,003 61 1,402,450 51.2 4,865 SRR10484086 AAPMGB000000000
CFSAN086254a Typhimurium 65 4,932,002 196,034 49 1,040,286 51.5 4,811 SRR10483547 AAQJEL000000000
CFSAN086255a Typhimurium 80 4,927,661 142,927 34 716,700 51.6 4,809 SRR10484103 AAPMWZ000000000
CFSAN086256a Typhimurium 69 4,933,305 150,467 61 1,490,166 51.2 4,821 SRR10484106 AAQFZR000000000
CFSAN086257a Typhimurium 72 4,931,049 150,468 54 1,374,634 51.4 4,818 SRR10483501 AAQHCE000000000
CFSAN086258a Typhimurium 58 4,936,274 252,441 63 1,594,138 51.2 4,815 SRR10484098 AAQFRR000000000
CFSAN086259a Typhimurium 71 4,934,667 150,467 71 1,884,086 51.1 4,830 SRR10484067 AAPCOV000000000
CFSAN086260a Typhimurium 96 4,912,131 115,146 60 1,440,148 51.2 4,821 SRR10484069 AAPBGV000000000
CFSAN086261a Typhimurium 58 4,912,246 238,507 75 2,127,322 51.6 4,786 SRR10484326 AAOXYU000000000
CFSAN086262a Typhimurium 73 4,918,299 161,553 41 885,486 51.6 4,797 SRR10483545 AAQHIV000000000
CFSAN086263a Typhimurium 75 4,922,751 149,742 41 907,964 51.5 4,805 SRR10483480 AAOXIA000000000
CFSAN086264a Kentucky 70 4,841,309 227,586 54 1,191,746 51.3 4,689 SRR10483526 AAPMVS000000000
CFSAN086265a Kentucky 60 4,840,528 227,586 61 1,415,800 51.3 4,684 SRR10483542 AAQGOL000000000
CFSAN086266a Kentucky 72 4,837,708 166,433 71 1,916,112 50.8 4,688 SRR10483503 AAQKKR000000000
CFSAN086267a Kentucky 83 4,838,523 147,917 44 1,131,282 51.1 4,698 SRR10483505 AAQKNV000000000
CFSAN086268a Typhimurium 68 4,936,212 208,660 74 1,744,100 51.6 4,818 SRR10483513 AAQJVW000000000
CFSAN086269a Typhimurium 73 4,934,491 188,062 84 2,401,192 51.3 4,823 SRR10483523 AAQKKU000000000
CFSAN086270a Typhimurium 59 4,911,808 249,800 88 2,336,890 51.5 4,780 SRR10484070 AAQHYF000000000
CFSAN086271a Typhimurium 60 4,917,284 196,037 78 2,275,534 51.5 4,794 SRR10484099 AAPRGB000000000
CFSAN086272a Kentucky 87 4,905,756 159,786 71 2,072,600 51.0 4,760 SRR10484644 AAOSRX000000000
CFSAN086273a Kentucky 120 4,901,773 94,649 38 1,036,214 50.9 4,774 SRR10484658 AAPMGC000000000
CFSAN086274a Kentucky 83 4,909,075 145,182 61 1,534,866 51.2 4,750 SRR10484683 AAPCQQ000000000
CFSAN086275a Kentucky 93 4,906,723 131,446 51 1,158,292 51.4 4,763 SRR10484699 AAPBZZ000000000
CFSAN086276a Typhimurium 73 4,933,661 150,334 61 1,419,314 51.5 4,821 SRR10484645 AAQKBA000000000
CFSAN086277a Typhimurium 77 4,934,252 168,030 46 1,052,296 51.5 4,826 SRR10484656 AAOYGX000000000
CFSAN086278a Typhimurium 60 4,937,379 252,441 64 1,419,542 51.8 4,807 SRR10484612 AAQKAT000000000
CFSAN086279a Typhimurium 64 4,938,210 204,339 69 1,537,472 51.9 4,815 SRR10484640 AAPAQB000000000
CFSAN086280a Typhimurium 64 4,935,453 208,660 70 1,638,648 51.4 4,818 SRR10484598 AAPUXW000000000
CFSAN086281a Typhimurium 58 4,941,817 187,584 64 1,389,580 51.6 4,818 SRR10484527 AAPMXA000000000
CFSAN086282a Typhimurium 83 4,946,678 149,552 44 903,638 51.4 4,860 SRR12967241 AAXAAK000000000
CFSAN086283a Typhimurium 63 4,957,193 187,935 50 1,044,874 51.4 4,846 SRR12967262 AAWZZR000000000
CFSAN086284a Typhimurium 59 4,976,298 276,437 71 1,524,242 51.4 4,864 SRR12967251 AAWZZX000000000
CFSAN086285a Typhimurium 60 4,948,765 226,447 50 1,042,438 51.7 4,829 SRR12967252 AAXAAA000000000
CFSAN086286a Typhimurium 54 4,966,994 282,036 51 1,064,636 51.6 4,852 SRR12967242 AAXAAI000000000
CFSAN086287a Typhimurium 54 4,961,880 252,441 58 1,215,424 51.6 4,840 SRR12967240 AAXAAJ000000000
CFSAN086288a Typhimurium 58 4,980,666 282,036 46 952,906 51.2 4,871 SRR12967237 AAXAAO000000000
CFSAN086289a Typhimurium 57 5,004,547 271,187 55 1,155,526 51.3 4,903 SRR12966113 AAXAGQ000000000
CFSAN086290a Infantis 30 4,786,382 375,508 53 1,073,286 51.9 4,678 SRR12966110 AAXAGR000000000
CFSAN086291a Infantis 33 4,742,404 335,807 59 1,169,406 51.9 4,637 SRR12965892 AAXAGZ000000000
CFSAN086292a Infantis 35 4,776,365 335,807 65 1,298,982 51.9 4,666 SRR12965890 AAXAHC000000000
CFSAN086293a Infantis 41 4,745,631 259,315 71 1,410,336 51.9 4,651 SRR12965889 AAXAHB000000000
CFSAN086294a Infantis 42 4,771,230 259,212 40 803,256 51.7 4,678 SRR12966111 AAXAGT000000000
CFSAN086295a Infantis 47 4,762,780 333,002 33 664,084 51.7 4,678 SRR12966108 AAXAGU000000000
CFSAN086296a Kentucky 55 4,865,752 237,368 50 1,042,280 49.8 4,695 SRR12965893 AAXAGW000000000
CFSAN086297a Kentucky 54 4,871,567 318,462 53 1,093,210 49.2 4,702 SRR12965891 AAXAHA000000000
CFSAN086298a Falkensee 27 4,939,334 388,082 63 1,328,982 52.0 4,735 SRR12965795 AAXAHD000000000
CFSAN086299a Falkensee 27 4,912,537 387,881 60 1,259,062 51.9 4,709 SRR12965763 AAXAHH000000000
CFSAN086300a Kentucky 56 4,856,787 333,317 50 1,016,860 49.5 4,687 SRR12966377 AAXAET000000000
CFSAN086301a Kentucky 52 4,864,696 237,359 46 951,178 49.5 4,690 SRR12966146 AAXAFS000000000
CFSAN086302a Kentucky 50 4,861,584 333,317 45 920,956 49.9 4,690 SRR12966144 AAXAFU000000000
CFSAN086303a Kentucky 55 4,875,967 341,107 55 1,154,692 50.4 4,709 SRR12966143 AAXAFY000000000
CFSAN086304a Typhimurium 61 4,967,903 208,660 55 1,152,716 51.8 4,854 SRR12966138 AAXAGC000000000
CFSAN086305a Typhimurium 93 4,908,210 125,315 48 971,944 51.4 4,851 SRR12966376 AAXAEU000000000
CFSAN086306a Typhimurium 55 4,967,195 276,616 46 963,906 51.7 4,850 SRR12967562 AAWZVR000000000
CFSAN086307a Typhimurium 57 4,963,378 276,424 37 765,832 51.7 4,845 SRR12967665 AAWZUI000000000
CFSAN086308a Typhimurium 58 4,945,355 271,187 36 742,728 51.7 4,822 SRR12967664 AAWZUM000000000
CFSAN086309a Typhimurium 52 4,973,263 277,250 42 868,546 51.8 4,858 SRR12967633 AAWZVP000000000
CFSAN086310a Enteritidis 24 4,751,240 400,836 45 895,802 51.9 4,623 SRR12967629 AAXWRO000000000
CFSAN086311a Enteritidis 25 4,751,762 401,316 45 907,638 51.9 4,620 SRR12967529 AAWZWP000000000
CFSAN086312a Mbandaka 56 4,768,692 258,839 36 715,336 51.9 4,647 SRR12967292 AAWZYP000000000
CFSAN086313a Mbandaka 61 4,772,621 322,049 45 914,388 52.0 4,656 SRR12967287 AAWZYS000000000
CFSAN086314a Braenderup 25 4,835,298 445,305 61 1,245,218 52.1 4,665 SRR12967663 AAWZUK000000000
CFSAN086315a Braenderup 40 4,785,607 353,145 68 1,387,212 52.1 4,636 SRR12967518 AAWZWZ000000000
CFSAN086316a Braenderup 85 4,699,470 131,222 66 1,319,192 51.8 4,598 SRR12967627 AAWZVN000000000
CFSAN086317a Braenderup 38 4,733,776 232,639 63 1,261,608 52.0 4,588 SRR12967650 AAWZUW000000000
CFSAN086318a Braenderup 26 4,743,417 445,345 64 1,272,548 52.0 4,588 SRR12967557 AAWZVV000000000
CFSAN086319a Braenderup 23 4,751,431 445,357 72 1,446,340 52.2 4,589 SRR12967558 AAWZVT000000000
CFSAN086320a Braenderup 24 4,728,023 445,348 55 1,093,982 52.1 4,568 SRR12967520 AAWZWX000000000
CFSAN086321a Montevideo 39 4,891,673 397,312 87 1,815,890 52.3 4,729 SRR12966357 AAXACZ000000000
CFSAN086322a Montevideo 40 4,766,621 397,426 69 1,406,856 52.3 4,604 SRR12965762 AAXAHG000000000
CFSAN086323a Montevideo 35 4,688,891 499,474 66 1,353,054 51.6 4,537 SRR12967150 AAXAAX000000000
CFSAN086324a Montevideo 38 4,828,360 397,450 87 1,759,786 52.3 4,664 SRR12967006 AAXACO000000000
CFSAN086325a Montevideo 38 4,814,055 390,914 71 1,449,564 52.3 4,648 SRR12966123 AAXAGN000000000
CFSAN086326a Typhimurium 54 5,000,568 277,250 76 1,611,520 52.1 4,880 SRR12967238 AAXAAL000000000
CFSAN086327a Typhimurium 52 5,113,879 277,250 115 2,509,634 52.2 4,999 SRR13252874 AAWLRY000000000
CFSAN086328a Typhimurium 50 5,088,230 277,250 96 2,078,426 52.2 4,988 SRR13252863 AAXXXB000000000
CFSAN086329a Typhimurium 51 5,027,966 277,250 86 1,851,202 52.2 4,915 SRR13249712 AAXYCT000000000
CFSAN086330a Muenster 39 4,786,310 349,276 74 1,505,010 52.1 4,668 SRR13249687 AAXYDI000000000
CFSAN086331a Muenster 37 4,725,790 349,525 81 1,650,876 51.8 4,698 SRR10854819 AAOQXH000000000
CFSAN086332a I –:z10:e,n,z15 34 4,701,594 272,822 90 1,809,394 52.2 4,641 SRR10854794 AANCIY000000000
CFSAN086333a Mbandaka 24 4,671,682 296,510 86 1,739,094 52.2 4,592 SRR10854875 AANUPN000000000
CFSAN086334a Mbandaka 33 4,784,241 276,631 91 1,869,112 52.1 4,769 SRR10827795 AAPNEP000000000
CFSAN086335a Mbandaka 40 4,786,993 295,490 88 1,805,270 52.0 4,767 SRR10827776 AAOQSZ000000000
CFSAN086336a Typhimurium 74 4,931,084 145,313 36 745,014 51.6 4,925 SRR10827627 AANUCL000000000
CFSAN086337a Typhimurium 62 4,931,438 188,042 42 870,738 51.6 4,915 SRR10827650 AAOQPV000000000
CFSAN086338a Typhimurium 48 4,959,178 276,474 85 1,804,652 51.9 4,947 SRR10827773 AAOPXW000000000
CFSAN086339a Typhimurium 54 4,936,252 252,441 37 759,972 51.7 4,914 SRR10827637 AAOKFW000000000
CFSAN086340a Typhimurium 56 4,961,613 240,486 45 956,966 51.5 4,952 SRR10827929 AAPVEQ000000000
CFSAN086341a Typhimurium 53 4,973,144 271,163 50 1,047,434 51.5 4,968 SRR10827813 AAOKFT000000000
CFSAN086342a Typhimurium 46 4,924,597 277,250 67 1,360,572 51.7 4,903 SRR10827761 AAQAIC000000000
CFSAN086343a Typhimurium 48 4,941,047 282,036 73 1,503,602 51.7 4,918 SRR10827756 AAOPZQ000000000
CFSAN086344a Typhimurium 53 5,098,999 282,036 116 2,476,802 51.6 4,983 SRR12967628 AAWZVQ000000000
CFSAN086345a Typhimurium 51 4,950,630 276,462 92 1,898,506 51.6 4,937 SRR10827769 AAOKFV000000000
CFSAN086346a Typhimurium 52 4,945,227 277,250 87 1,774,270 51.6 4,927 SRR10827935 AAOKFC000000000
CFSAN086347a Typhimurium 52 4,942,275 252,441 78 1,609,794 51.5 4,928 SRR10822922 AAOUYZ000000000
CFSAN086348a Typhimurium 57 4,985,896 276,437 61 1,267,074 51.5 4,975 SRR10822921 AANWQX000000000
CFSAN086349a Typhimurium 51 4,907,917 276,498 58 1,203,678 51.5 4,915 SRR10822920 AAOKDR000000000
CFSAN086350a Typhimurium 47 4,922,987 282,036 63 1,317,854 51.6 4,897 SRR10823794 AANVQQ000000000
CFSAN086351a Typhimurium 48 4,935,202 282,036 73 1,628,536 51.6 4,915 SRR10825166 AAOKEJ000000000
CFSAN086352a Typhimurium 49 4,933,433 282,036 68 1,390,848 51.8 4,919 SRR10824939 AAOKEI000000000
CFSAN086353a Typhimurium 48 4,929,844 277,250 55 1,148,458 51.7 4,911 SRR10823736 AAQAHK000000000
CFSAN086354a Typhimurium 49 4,944,380 277,250 60 1,231,866 51.7 4,929 SRR10823734 AAPYAF000000000
CFSAN086355a Typhimurium 49 4,936,259 277,250 59 1,212,902 51.8 4,919 SRR10827536 AAOQAE000000000
CFSAN086356a Mbandaka 54 4,752,869 322,049 82 1,631,566 52.0 4,730 SRR10828021 AAOPZZ000000000
CFSAN086357a Mbandaka 57 4,752,189 322,049 81 1,601,576 52.0 4,738 SRR10827554 AAOQUN000000000
CFSAN086358a Kentucky 49 4,845,149 381,542 87 1,767,972 51.8 4,800 SRR10827545 AAOKER000000000
CFSAN086359a Kentucky 60 4,844,553 158,810 76 1,658,378 52.4 4,803 SRR10827639 AAOPZG000000000
CFSAN086360a Mbandaka 86 4,728,297 117,221 70 1,480,970 52.2 4,748 SRR10827531 AAOKEY000000000
CFSAN086361a Kentucky 57 4,800,212 127,914 68 1,460,742 52.3 4,749 SRR10824113 AANUMN000000000
CFSAN086362a Kentucky 49 4,892,880 239,664 75 1,555,552 52.1 4,720 SRR12967530 AAWZWO000000000
CFSAN086363a Kentucky 50 4,881,334 332,500 52 1,062,462 51.8 4,716 SRR12967561 AAWZVU000000000
CFSAN086364a Typhimurium 44 4,896,854 273,330 66 1,375,546 52.1 4,770 SRR12967649 AAWZUZ000000000
CFSAN086365a Typhimurium 143 4,858,300 94,275 50 1,034,456 51.4 4,818 SRR12967288 AAWZYV000000000
CFSAN086366a Mbandaka 432 4,645,909 21,789 57 1,124,084 50.8 4,891 SRR12967286 AAWZYY000000000
CFSAN086367a Mbandaka 55 4,713,335 167,154 57 1,160,548 51.7 4,575 SRR12967556 AAWZVZ000000000
CFSAN086368a Mbandaka 41 4,730,177 235,125 47 933,866 51.7 4,580 SRR12967662 AAWZUL000000000
CFSAN086369a Mbandaka 31 4,731,144 322,340 45 911,342 51.7 4,568 SRR12967634 AAWZVM000000000
CFSAN086370a Mbandaka 35 4,692,652 261,721 45 888,884 52.0 4,527 SRR12967622 AAWZVS000000000
CFSAN086371a Mbandaka 28 4,732,990 336,543 59 1,183,172 52.0 4,572 SRR12967495 AAWZXV000000000
CFSAN086372a Mbandaka 31 4,700,632 261,566 66 1,310,824 52.0 4,535 SRR12967492 AAWZXW000000000
CFSAN086373a Mbandaka 80 4,749,220 117,254 53 1,059,592 51.5 4,638 SRR12967493 AAWZXX000000000
CFSAN086374a Meleagridis 95 4,915,482 93,604 60 1,246,854 51.3 4,805 SRR12967358 AAWZYA000000000
CFSAN086375a Meleagridis 175 4,929,803 56,775 66 1,387,022 51.1 4,899 SRR12967521 AAWZWY000000000
CFSAN086376a Mbandaka 58 4,666,599 164,207 47 938,170 51.9 4,600 SRR10140519 AALGDI000000000
CFSAN086377a Mbandaka 58 4,666,526 161,559 39 770,130 51.8 4,597 SRR10140522 AALGDJ000000000
CFSAN086378a Mbandaka 38 4,707,246 321,993 64 1,459,282 51.3 4,633 SRR10269955 AALWWO000000000
CFSAN086379a Mbandaka 30 4,705,878 336,386 42 845,762 51.9 4,619 SRR10166206 AALBYO000000000
CFSAN086380a Mbandaka 43 4,739,762 278,414 40 821,452 51.8 4,703 SRR10166143 AALBYB000000000
CFSAN086381a Mbandaka 38 4,739,077 336,385 53 1,069,794 51.9 4,694 SRR10140567 AALGDP000000000
CFSAN086382a Mbandaka 40 4,740,670 336,464 52 1,062,878 51.9 4,699 SRR10140564 AALGDU000000000
CFSAN086383a Mbandaka 39 4,703,598 278,963 62 1,229,028 51.8 4,650 SRR10140554 AALGDW000000000
CFSAN086384a Mbandaka 40 4,738,241 236,501 50 1,013,030 51.8 4,696 SRR10140553 AALGDT000000000
CFSAN086385a Mbandaka 45 4,740,251 336,276 51 1,038,030 51.9 4,704 SRR10140545 AALGDR000000000
CFSAN086386a Mbandaka 40 4,701,822 325,300 35 697,552 52.0 4,626 SRR10140541 AALGDK000000000
CFSAN086387a Mbandaka 67 4,699,536 160,282 62 1,328,064 51.5 4,647 SRR10140543 AALGDM000000000
CFSAN086388a Mbandaka 112 4,728,826 119,051 67 1,516,304 51.3 4,747 SRR10140498 AALGDL000000000
CFSAN086390a Mbandaka 52 4,737,683 235,125 79 1,686,002 51.6 4,698 SRR10140482 AALGDG000000000
CFSAN086391a Mbandaka 37 4,739,856 336,370 63 1,312,338 51.8 4,699 SRR10140484 AALGDF000000000
CFSAN086392a Mbandaka 44 4,740,415 322,050 65 1,330,202 51.8 4,697 SRR10165145 AALBUV000000000
CFSAN086393a Mbandaka 28 4,705,905 335,615 63 1,267,928 52.1 4,621 SRR10165152 AALBUZ000000000
CFSAN086394a Meleagridis 30 4,867,199 335,155 58 1,216,682 51.9 4,780 SRR10165030 AALBUK000000000
CFSAN086395a Mbandaka 29 4,675,025 335,919 74 1,453,554 52.2 4,581 SRR10165134 AALBUR000000000
CFSAN086396a Mbandaka 38 4,740,437 235,125 46 943,850 52.0 4,697 SRR10140520 AALGDN000000000
CFSAN086397a Mbandaka 51 4,737,402 248,197 51 1,032,358 51.8 4,704 SRR10140523 AALGDO000000000
CFSAN086398a Mbandaka 91 4,727,827 108,291 57 1,141,860 51.7 4,732 SRR10166213 AALBYX000000000
CFSAN086399a Mbandaka 62 4,739,253 202,832 56 1,225,238 51.7 4,710 SRR10166232 AALBYR000000000
CFSAN086400a Mbandaka 53 4,738,002 230,198 35 737,460 51.8 4,703 SRR10166210 AALBYP000000000
CFSAN086401a Mbandaka 50 4,739,115 276,631 54 1,149,812 51.7 4,700 SRR10166211 AALBYS000000000
CFSAN086402a IIIa –:z4,z24:– 48 4,558,832 191,822 51 1,020,596 51.1 4,537 SRR10166207 AALBYT000000000
CFSAN086403a IIIa –:z4,z24:– 47 4,558,658 186,926 59 1,196,110 51.0 4,534 SRR10140575 AALGDV000000000
CFSAN086405a Typhimurium 53 4,897,816 282,036 58 1,211,344 52.3 4,814 SRR10140568 AALGDS000000000
CFSAN086408a Typhimurium 63 4,891,814 192,274 55 1,133,246 52.1 4,815 SRR10140517 AALGDH000000000
CFSAN086409a Typhimurium 59 4,892,726 252,441 58 1,224,836 51.6 4,819 SRR10140518 AAKXTQ000000000
CFSAN086410a Enteritidis 28 4,724,629 406,451 65 1,301,324 51.9 4,669 SRR10140505 AAKXTO000000000
CFSAN086411a Typhimurium 185 4,873,238 43,364 38 833,682 52.2 4,866 SRR10165193 AALBWM000000000
CFSAN086412a Mbandaka 70 4,708,953 181,795 45 973,594 51.6 4,671 SRR10165146 AALBUT000000000
CFSAN086413a Mbandaka 66 4,712,217 235,125 44 941,698 51.6 4,669 SRR10155288 AALAGV000000000
CFSAN086414a Mbandaka 72 4,753,278 199,234 44 934,532 51.8 4,719 SRR10155277 AALAKT000000000
CFSAN086415a Mbandaka 69 4,751,579 247,872 45 1,008,360 51.6 4,722 SRR10155276 AALAKY000000000
CFSAN086416a Typhimurium 77 4,891,377 129,565 66 1,545,472 52.5 4,822 SRR10156281 AALAJY000000000
CFSAN086417a Typhimurium 73 4,896,423 187,568 51 1,092,498 52.5 4,823 SRR10156262 AALAJW000000000
CFSAN086418a Mbandaka 62 4,708,866 197,157 31 641,328 51.9 4,658 SRR10156261 AALAJU000000000
CFSAN086419a Mbandaka 67 4,713,399 187,862 50 1,054,254 52.0 4,670 SRR10156247 AALAJR000000000
CFSAN086420a Typhimurium 90 4,887,889 130,776 47 1,022,382 51.9 4,835 SRR10156260 AALAJQ000000000
CFSAN086421a Typhimurium 126 4,881,937 83,010 48 1,041,544 51.9 4,858 SRR10156197 AALAJL000000000
CFSAN086422a Typhimurium 96 4,883,375 119,214 46 984,222 52.3 4,838 SRR10156068 AALAHF000000000
CFSAN086423a Typhimurium 68 4,907,464 193,833 47 987,406 52.8 4,842 SRR10194577 AALFPX000000000
CFSAN086424a Typhimurium 56 4,881,712 196,036 55 1,150,354 52.4 4,810 SRR10194552 AALFPW000000000
CFSAN086425a Typhimurium 57 4,893,095 277,250 55 1,119,116 52.4 4,811 SRR10194549 AALFPY000000000
CFSAN086426a Mbandaka 53 4,756,131 235,125 75 1,496,794 52.1 4,717 SRR10194308 AALFOC000000000
CFSAN086427a Mbandaka 51 4,751,790 236,501 62 1,251,728 52.1 4,712 SRR10194323 AALFOP000000000
CFSAN086429a Typhimurium 65 4,902,059 226,339 41 836,472 52.5 4,832 SRR10194626 AALFPZ000000000
CFSAN086431a Typhimurium 91 4,893,600 110,053 32 657,032 52.4 4,838 SRR10194537 AALFPS000000000
CFSAN086432a Typhimurium 74 4,887,653 187,569 39 806,104 52.3 4,826 SRR10194531 AALFPA000000000
CFSAN086434a Mbandaka 58 4,817,234 336,370 68 1,292,840 51.5 4,690 SRR12967357 AALWWI000000000
CFSAN086435a Mbandaka 86 4,760,515 169,007 58 1,164,028 50.9 4,661 SRR12967293 AALZHT000000000
CFSAN086436a IIIa 4:z4,z24:– 50 4,579,560 191,822 59 1,598,828 50.9 4,468 SRR12967519 AALWWF000000000
CFSAN086437a IIIa –:z4,z24:– 41 4,571,927 247,531 73 1,627,010 51.8 4,456 SRR12967517 AALZHR000000000
CFSAN086438a Typhimurium 58 4,964,940 277,053 70 1,980,652 51.9 4,823 SRR12967508 AALZHQ000000000
CFSAN086439a Typhimurium 60 4,914,856 217,232 64 1,387,200 51.9 4,776 SRR12967494 AALZHP000000000
CFSAN086440a Typhimurium 63 4,911,001 208,660 74 1,270,218 51.7 4,771 SRR12967491 AALWWB000000000
CFSAN086441a Typhimurium 162 4,890,774 67,687 64 1,580,114 51.5 4,849 SRR12967354 AALZHU000000000
CFSAN086442a I 4,[5],12:i:– 67 4,934,939 185,354 48 805,890 51.2 4,871 SRR12967559 AALZHO000000000
CFSAN086443a IIIa –:z4,z24:– 61 4,526,291 149,905 84 825,452 51.6 4,408 SRR12967623 AALWWG000000000
CFSAN086444a Typhimurium 66 4,903,780 252,441 65 927,660 51.7 4,770 SRR12967621 AALZHZ000000000
CFSAN086445a Typhimurium 76 4,899,541 149,552 51 1,344,416 51.3 4,816 SRR10321182 AAMMBZ000000000
CFSAN086446a Typhimurium 58 4,897,688 282,036 110 2,302,540 52.4 4,852 SRR10827527 AAOAAL000000000
CFSAN086447a Typhimurium 61 4,911,875 225,667 93 1,953,686 52.7 4,876 SRR10827534 AAOVAC000000000
CFSAN086448a IIIa –:z4,z24:– 45 4,558,171 212,176 122 2,386,342 51.7 4,556 SRR10823790 AAOKEM000000000
CFSAN086449a IIIa –:z4,z24:– 44 4,558,958 216,344 111 2,163,870 51.7 4,559 SRR10823778 AAOQUO000000000
CFSAN086450b Enteritidis 24 4,727,865 438,869 87 1,754,310 52.2 4,692 SRR10827559 AAYAGU000000000
CFSAN086451b Enteritidis 22 4,727,798 478,638 110 2,193,954 51.9 4,693 SRR10827560 AAYAGX000000000
CFSAN086452b Enteritidis 27 4,724,006 406,451 90 1,824,596 51.9 4,651 SRR10321115 AAMMBN000000000
CFSAN086453b Enteritidis 29 4,723,894 376,176 81 1,620,758 52.0 4,656 SRR10320790 AAMIRA000000000
CFSAN086454b Enteritidis 27 4,725,455 406,451 95 1,991,928 52.0 4,651 SRR10321163 AAMMBX000000000
CFSAN086455b Enteritidis 26 4,725,656 406,919 74 1,593,176 51.9 4,654 SRR10321157 AAMMBR000000000
CFSAN086456b Enteritidis 31 4,724,132 406,115 77 1,568,088 51.9 4,660 SRR10321156 AAMMBS000000000
CFSAN086457b Enteritidis 33 4,723,372 375,768 64 1,357,908 51.9 4,658 SRR10321184 AAMMCF000000000
CFSAN086458b Enteritidis 30 4,725,176 401,025 98 2,236,302 51.6 4,598 SRR10484556 AAPMEN000000000
CFSAN086459b Enteritidis 31 4,724,450 283,989 72 1,784,426 51.6 4,598 SRR10484701 AAPCAG000000000
CFSAN086460b Enteritidis 36 4,723,538 358,574 95 2,561,110 51.6 4,599 SRR10484524 AAPRFY000000000
CFSAN086461b Enteritidis 38 4,723,436 358,578 56 1,396,254 51.5 4,606 SRR10484530 AAQKJL000000000
CFSAN086462b Kentucky 74 4,838,403 128,841 71 1,796,366 51.3 4,692 SRR10484599 AAQKAY000000000
CFSAN086463b Kentucky 81 4,839,549 127,898 51 1,162,956 51.5 4,695 SRR10484597 AANCCW000000000
CFSAN086464b Liverpool 55 4,751,693 216,848 49 1,160,362 49.7 4,581 SRR10484528 AAQKAU000000000
CFSAN086465b Liverpool 51 4,762,648 287,276 55 1,414,554 49.3 4,585 SRR10484708 AAPBHR000000000
CFSAN086466b Enteritidis 33 4,721,330 376,208 59 1,489,142 51.5 4,602 SRR10484700 AAQKOF000000000
CFSAN086467b Enteritidis 38 4,721,966 268,212 58 1,378,244 51.6 4,697 SRR10824531 AAOKEH000000000
CFSAN086468b Enteritidis 38 4,722,595 313,679 57 1,284,516 51.5 4,606 SRR10484651 AAOYAC000000000
CFSAN086469b Enteritidis 42 4,722,183 268,207 63 1,503,496 51.4 4,707 SRR10824934 AAOQRK000000000
CFSAN086470b Kentucky 115 5,026,979 126,570 87 1,963,946 51.0 4,902 SRR10484643 AAQICG000000000
CFSAN086471b Kentucky 119 5,024,990 111,845 56 1,277,668 51.3 4,900 SRR10484631 AAQKLU000000000
CFSAN086472b Alachua 50 4,899,077 371,315 53 1,391,358 50.6 4,778 SRR10484652 AAPXJP000000000
CFSAN086473b Alachua 52 4,904,853 235,986 62 1,487,642 50.8 4,783 SRR10484684 AAPUXR000000000
a

Collected in 2017.

b

Collected in 2018.