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. 2022 Jul 29;20:4195–4205. doi: 10.1016/j.csbj.2022.07.035

Fig. 7.

Fig. 7

Substrate behavior in cavity 2. (A) Different substrate positions in cavity 2 observed during the classical MD simulations starting from the ketMD-generated transient conformations, from the crossing of the leucine gate to the leaving of the cavity. Residues forming strong interactions with the substrate are labelled and are shown in licorice representation. (B) The fluctuation of the external loop regions corresponding to the substrate positions in panel A.