Table 2.
Overall performance of the WGS-AST models across all antimicrobials, broken down by sequencing platform.
Platform | CA | VME | ME | TP | FP | FN | TN | n |
---|---|---|---|---|---|---|---|---|
Illumina | 90% | 10% | 11% | 1,646 | 161 | 178 | 1,315 | 3,300 |
ONT | 88% | 11% | 13% | 1,619 | 194 | 205 | 1,282 | 3,300 |
CA: Categorical agreement, VME: Very major error, ME: Major error, TP: True positive, FP: False positive, FN: False negative, TN: True negative, and n: number of evaluated species-antimicrobial pairs.