Skip to main content
. Author manuscript; available in PMC: 2022 Aug 22.
Published in final edited form as: FASEB J. 2020 Apr 10;34(5):7192–7207. doi: 10.1096/fj.202000110R

TABLE 1.

Data collection and refinement statistics

SeMET GDAP1-core
PDB ID 6UIH
Data collection
Space group I432
Cell dimensions
a = b=c (Å) 196.6
 α = β=γ (°) 90
Unique Reflections 15,877
Resolution (Å) 98.3 – 2.83 (2.88–2.83)a
Rpim (%)b 1.3 (28.7)
II 37.3 (2.3)
Completeness (%) 100.0 (100.0)
Redundancy 70.1 (79.1)
CC(1/2) (%) 99.96 (86.42)
Anomalous Completeness 100 (100)
Anomalous Multiplicity 37.9 (41.6)
CC (ano) 0.868 (0.011)
Wilson B-factor (Å2) 93.2
Refinement
Resolution (Å) 98.0 – 2.83
Rworkc / Rfreed (%) 21.5 / 22.7
Number of atoms 3248
Avg B-factors (Å2) 98.0
R.m.s. deviations
 Bond lengths (Å) 0.014
 Bond angles (°) 1.291
Ramachandran
 Favored, Allowed, Outliers (%) 95.3, 4.7, 0.0
 Clashscore 0.92
a

Values in parentheses are for highest-resolution shell.

b

Rpim = Σh [1/(/nh−1)]1/2 * Σi |<Ih> − Ih,i| / Σh Σi Ih,i where h represents unique reflections, i are their symmetry-equivalents, nh denotes the multiplicity, <I> is the average intensity of multiple measurements.

c

Rwork = Σhkl∥Fobs(hkl)∥ − Fcalc (hkl)∥/Σhkl|Fobs(hkl)|.

d

Rfree represents the cross-validation R factor for 7.5% of the reflections against which the model was not refined. A total of 1200 reflections are contained in this test set.