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. 2022 Aug 23;40(11):111335. doi: 10.1016/j.celrep.2022.111335
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

P2C-1F11 Ge et al. (2021) PDB code 7CDI
4A8 Chi et al. (2020) PDB code 7C2L
CC40.8 Zhou et al. (2022) PDB code 7SJS
REGN10933 Hansen et al. (2020) PDB code 6XDG
REGN10987 Hansen et al. (2020) PDB code 6XDG
VRC01 Zhou et al. (2013) PDB code 4LST; RRID: AB_2491019
HRP goat anti-human IgG (H + L), polyclonal ZSGB-BIO Cat# ZB-2304

Bacterial and virus strains

E. coli DH5α Takara Cat# 9057
SARS-CoV-2/wild-type (WT) Ju et al. (2022) N/A
SARS-CoV-2/Beta Ju et al. (2022) N/A
SARS-CoV-2/Delta Ju et al. (2022) N/A

Chemicals, peptides, and recombinant proteins

FreeStyle 293 expression medium Gibco Cat# 12338026
SARS-CoV-2 WT S1 Sino Biological Inc. Cat# 40591-V08H
SARS-CoV-2 WT RBD Sino Biological Inc. Cat# 40592-V08B
SARS-CoV-2 WT NTD Sino Biological Inc. Cat# 40591-V49H
SARS-CoV-2 WT S2 Sino Biological Inc. Cat# 40590-V08B
SARS-CoV-2 WT spike Sino Biological Inc. Cat# 40589-V08B1
SARS-CoV-2 WT NP Sino Biological Inc. Cat# 40588-V08B
SARS-CoV spike Sino Biological Inc. Cat# 40634-V08B
MERS-CoV spike Sino Biological Inc. Cat# 40069-V08B
HCoV-HKU1 spike Sino Biological Inc. Cat# 40606-V08B
HCoV-OC43 spike Sino Biological Inc. Cat# 40607-V08B
HCoV-229E spike Sino Biological Inc. Cat# 40605-V08B
HCoV-NL63 spike Sino Biological Inc. Cat# 40604-V08B
Penicillin-Streptomycin (10,000 U/mL) Gibco Cat# 15140163
Ampicillin Amresco Cat# 69-52-3
Polyethylenimines (PEIs) 25K PolySciences Cat# 23966
Trypsin Gibco Cat# 25200–072
Fetal bovine serum Gibco Cat# 10099–141C
Dulbecco’s Modified Eagle Medium Gibco Cat# 11965–092
HEPES (1M) Buffer Solution Gibco Cat# 15630–080
Opti-MEM Reduced Serum Medium Gibco Cat# 51985034
Roswell Park Memorial Institute (RPMI) 1640 Medium Gibco Cat# 11875–101
DEAE-Dextran hydrochloride Sigma Aldrich Cat# D9885-10G

Critical commercial assays

RNeasy Plus Mini Kit Qiagen Cat# 74134
QIAquick Gel Extraction Kit Qiagen Cat# 28706
Bright-Lite Luciferase Assay System Vazyme Biotech Cat# DD1204-03
Single Cell Full Length mRNA-Amplification Kit Vazyme Biotech Cat# N712
Gold Hi EndoFree Plasmid Maxi Kit CWBIO Cat# CW2104M
TMB substrate Sangon Biotech Cat# E661007-0100

Deposited data

Human antibody repertoire This paper National Genomics Data Center: HRA002366

Experimental models: Cell lines

HEK293F Gibco Cat# R79007
Human: HEK293T ATCC Cat# CRL-3216
HEK293T expressing human ACE2 YEASEN Biotech Cat# 41107ES03
Jurkat-FcγRIIIa-V158 Effector Cells Vazyme Biotech Cat# DD1301

Recombinant DNA

pNL4-3.Luc.R-E− NIH AIDS Reagent Program Cat# 3418

Software and algorithms

TrimGalore v0.6.0 Trim Galore https://github.com/FelixKrueger/TrimGalore/
PANDAseq v2.11 Masella et al. (2012) https://github.com/neufeld/pandaseq
IgBlast v1.17.1 Ye et al. (2013) https://ncbi.github.io/igblast/
Needleall A program from EMBOSS package http://emboss.sourceforge.net/apps/release/6.6/emboss/apps/needleall.html
MEGA v10.2.6 Kumar et al. (2008) https://www.megasoftware.net/
PyMOL PyMOL http://www.pymol.org
Graphpad Prism 8 GraphPad https://www.graphpad.com/
R R https://www.r-project.org/

Other

IMGT Reference directory sets Lefranc et al. (2005) http://www.imgt.org/vquest/refseqh.
html#VQUEST