Table 1.
Oligonucleotide primers specific to VP7, VP4, and VP6 RVA genes.
| Name | Outer/inner Fwd./rev. | Sequence (5′ − 3′) | Locationa | Product size |
|---|---|---|---|---|
| Human VP7 | ||||
| H7F292_N | Outer fwd. | TGYYTRTAYTAYCCWDBHKMRG | 292–313 | 347 |
| H7F340_N | Outer fwd. | TGGAMRRAYWCDYTDTCNCAR | 340–360 | 299 |
| H7R638_N | Outer rev. | GGACAHACTTTHAYNGTRCA | 619–638 | − |
| H7F373 | Inner fwd. | AARGGDTGGCCRACWRRATC | 373–392 | 239 |
| H7R611 | Inner rev. | CCCATHGMWATCCAYTTRTTYGM | 589–611 | |
| Human VP4 | ||||
| H4F793_N | Outer fwd. | TGGAARGARATGCARTATAAY | 793–813 | |
| H4R1149_N | Outer rev. | RCABWYYACDKMRTTYAAATY | 1,129–1,149 | 357 |
| H4R1208_N | Outer rev. | CCHCCDBTCATHAYTGGSY | 1,190–1,208 | 416 |
| H4F865 | Inner fwd. | GGWYTRGGHTATAARTGGKCHGAA | 865–888 | 229 |
| H4R1093 | Inner rev. | ATGCYTKHGAATCRTCCCAR | 1,074–1,093 | |
| Human VP6 | ||||
| H6F648_N | Outer fwd. | GARCAYRTWGTMCAGCTHMG | 648–667 | 462 |
| H6R1109_N | Outer rev. | YGGRAADACTGGTCCAACTGGTAT | 1,086–1,109 | |
| H6F745 | Inner fwd. | CWGAYGGMGCRACTACATGG | 745–764 | 250 |
| H6R994 | Inner rev. | ARYGTVAGTCCWACTGTWGC | 975–994 | |
| Animal VP6 | ||||
| A6F192_N | Outer fwd. | AGAAAYTGGAMWTTYRAYTTYGG | 192–214 | 457 |
| A6R648_N | Outer rev. | CAAAYTGYTGHRTATTWGCTGG | 627–648 | |
| A6F303 | Inner fwd. | AATGTRTGYATGGATGARATRGYWMGR | 303–329 | 272 |
| A6R574 | Inner rev. | GCRTTHADCCACATNGTNCC | 555–574 |
Locations of the NCBI reference nucleotide sequence (accession no. NC011503.2 for human VP7, NC011510.2 for human VP4, and NC011509.2 for both human and animal VP6) are represented.