Table 5.
List of all peptides that matched to an NTR entry and for which a strong homology match to a UniProt entry was found
| Accession | Match | UniProt entry | Enzyme | Extra info |
|---|---|---|---|---|
| ENST00000439303_10_10174230_ntr_100db1 Elongin C pseudogene 3, processed pseudogene |
1 MDGEEKTCGGCEGPDAMYVKLISSDGHEFIVKR 33 |
Q15369 Elongin-C |
Trypsin | 1 AA difference Possible SNP? Yes |
| MDGEEKT GGCEGPDAMYVKLISSDGHEFIVKR | ||||
| 1 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKR 33 | ||||
| ENST00000486575_22_20127011_ntr_100db1 RAN binding protein 1, Retained intron |
1 MKEETKEDAEEKQ 13 |
P43487 Ran-specific GTPase-activating protein (RANBP1) |
Trypsin, chymotrypsin | 1 AA difference Possible SNP? No |
| KEETKEDAEEKQ | ||||
| 189 VKEETKEDAEEKQ 201 | ||||
| ENST00000458332_17_19446852_ntr_111db1 Ribosomal protein S2 pseudogene 46, processed pseudogene |
2 ADDAGAAGGPGGPGGPEMGNRGGFRGGF 29 |
P15880 40S ribosomal protein S2 |
GluC | 1 AA difference Possible SNP? Yes |
| ADDAGAAGGPGGPGGP MGNRGGFRGGF | ||||
| 2 ADDAGAAGGPGGPGGPGMGNRGGFRGGF 29 | ||||
| ENST00000556323_14_92026617_ntr_100db1 Prothymosin alpha pseudogene, processed pseudogene |
2 EKKEVVEEAENGRDAPAD 19 | P06454 Prothymosin alpha | Trypsin, chymotrypsin | 1 AA difference Possible SNP? Yes |
| EKKEVVEEAENGRDAPA+ | ||||
| 19 EKKEVVEEAENGRDAPAN 36 | ||||
| ENST00000556323_14_92026566_ntr_100db1 Prothymosin alpha pseudogene, processed pseudogene |
2 SDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPAD 36 | P06454 Prothymosin alpha | Trypsin, chymotrypsin | 1 AA difference Possible SNP? Yes |
| SDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPA+ | ||||
| 2 SDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPAN 36 | ||||
| ENST00000582213_17_7572835_ntr_100db1 Eukaryotic translation initiation factor 4A1, retained intron |
9 FPSNWNEIVDSFDDMNLSESLLR 31 | P60842 Eukaryotic initiation factor 4A-I | Trypsin | 2 AA difference Possible SNP? No |
| SNWNEIVDSFDDMNLSESLLR | ||||
| 23 IESNWNEIVDSFDDMNLSESLLR 45 | ||||
| ENST00000403258_6_88276364_ntr_101db1 ACTB pseudogene 8, processed pseudogene |
Match to Q6S8J3 | Q6S8J3 POTE ankyrin domain family member E and several Actin variants (P68032, P62736, P68133, …) | GluC | 1 AA difference Possible SNP? No |
| 12 MASAASSSSLE 22 | ||||
| MA AASSSSLE | ||||
| 927 MATAASSSSLE 937 | ||||
| Match to P68032 (and other actin variants) | ||||
| 12 MASAASSSSLE 22 | ||||
| MA AASSSSLE | ||||
| 229 MATAASSSSLE 239 | ||||
| ENST00000402643_6_166064725_ntr_111db1 Glyceraldehyde-3-phosphate dehydrogenase pseudogene 72, Transcribed processed pseudogene |
2 ASTGTAKAVGKVIPELNGKL 37 | P04406 Glyceraldehyde-3-phosphate dehydrogenase | Trypsin | 1 AA difference Possible SNP? Yes |
| ASTG AKAVGKVIPELNGKL | ||||
| 209 ASTGAAKAVGKVIPELNGKL 228 | ||||
| ENST00000530835_11_90283408_ntr_011db2 Tubulin alpha pseudogene 2, processed pseudogene |
70 GDVVPKDANAAIATIKTKR 88 |
Q71U36 Tubulin alpha-1A chain and other tubulin alpha chains: P68363 P0DPH7, Q6PEY2, Q9BQE3 |
Trypsin | 1 AA difference Possible SNP? Yes |
| GDVVPKD NAAIATIKTKR | ||||
| 321 GDVVPKDVNAAIATIKTKR 339 | ||||
| ENST00000530835_11_90283408_ntr_011db2 Tubulin alpha pseudogene 2, processed pseudogene |
74 PKDANAAIATIKTKR 89 |
Q71U36 Tubulin alpha-1A chain P68363 Tubulin alpha-1B chain and other tubulin alpha chains: P0DPH7, Q6PEY2, Q9BQE3 |
Trypsin | 1 AA difference Possible SNP? Yes |
| PKD NAAIATIKTKR | ||||
| 325 PKDVNAAIATIKTKR 339 |
For each peptide, the accessions (containing both the Ensembl accession and transcript information) are provided, the column “match” contains the peptide sequence of the identified peptide matched to the NTR and the corresponding sequence in the UniProt protein it was matched to, with the positions of the peptide within the NTR and UniProt proteins. The UniProt accession to which the NTR peptide is matched to, the enzyme (protease) the peptide was identified with and some extra information are listed.