Table 5.
Compound | Ki (μM) | Binding free energy ligand (kcal/mol) | Ligand (kcal/mol) efficiency |
---|---|---|---|
BepBeH | 0.93 ± 0.61 | −10.02 ± 0.78 | 0.27 ± 0.09 |
BepINH | 1.14 ± 0.81 | −8.11 ± 0.49 | 0.27 ± 0.09 |
E64 | 711.70 ± 0.75 | −4.29 ± 0.44 | 0.23 ± 0.10 |
E64 = reference (cocrystallized) ligand, Ki is the theoretical inhibition constant and like binding energy, lower values indicate more favorable interaction. Ligand efficiency is a concept that expresses the sensitivity of binding affinity to an increase in molecular size. The higher the ligand efficiency the better the molecule is as a drug-lead [13]