Table 2. The Per-Residue Energy Decomposition Results of Key Interacting Residues of SARS-CoV-2, SARS-CoV, MERS-CoV, and SARS-CoV-2 Mutant NSP14–NSP10 Complexesa.
PPI complex systems | per-residue energy
contribution (kJ/mol) |
||||
---|---|---|---|---|---|
NSP14-K200 | NSP14-I201 | NSP10-F19 | NSP10-V21 | ||
replica 1 | wild-type SARS-CoV-2 | –21.50 ± 0.91 | –6.71 ± 0.27 | –25.03 ± 0.89 | –13.16 ± 0.48 |
SARS-CoV-2/NSP14P203L | –26.81 ± 0.56 | –8.17 ± 0.18 | –31.01 ± 0.20 | –16.48 ± 0.15 | |
SARS-CoV-2/NSP14F233L | –17.98 ± 1.14 | –7.26 ± 0.18 | –30.34 ± 0.21 | –15.82 ± 0.15 | |
SARS-CoV-2/NSP14L177F | –23.50 ± 0.70 | –7.71 ± 0.19 | –29.16 ± 0.23 | –15.40 ± 0.19 | |
SARS-CoV-2/NSP14triple | –28.49 ± 0.59 | –7.76 ± 0.19 | –31.15 ± 0.19 | –15.54 ± 0.15 | |
SARS-CoV | –44.59 ± 0.67 | –5.61 ± 0.21 | –27.66 ± 0.20 | –17.08 ± 0.17 | |
MERS-CoV | –6.64 ± 0.68 | –3.82 ± 0.33 | –14.02 ± 0.95 | –9.46 ± 0.66 | |
replica 2 | wild-type SARS-CoV-2 | –22.95 ± 0.51 | –9.05 ± 0.17 | –29.76 ± 0.20 | –16.09 ± 0.16 |
SARS-CoV-2/NSP14P203L | –26.61 ± 0.49 | –5.29 ± 0.16 | –30.63 ± 0.20 | –15.22 ± 0.17 | |
SARS-CoV-2/NSP14F233L | –23.03 ± 0.44 | –5.38 ± 0.17 | –32.51 ± 0.17 | –16.24 ± 0.16 | |
SARS-CoV-2/NSP14L177F | –13.61 ± 0.55 | –8.03 ± 0.19 | –30.50 ± 0.22 | –15.27 ± 0.15 | |
SARS-CoV-2/NSP14triple | –29.50 ± 0.67 | –5.49 ± 0.21 | –31.08 ± 0.19 | –15.56 ± 0.14 | |
SARS-CoV | –40.68 ± 0.83 | –5.53 ± 0.16 | –29.92 ± 0.23 | –16.69 ± 0.16 | |
MERS-CoV | –24.20 ± 0.62 | –2.51 ± 0.21 | –25.83 ± 0.21 | –16.64 ± 0.16 | |
replica 3 | wild-type SARS-CoV-2 | –22.28 ± 0.67 | –5.10 ± 0.16 | –30.63 ± 0.17 | –13.41 ± 0.17 |
SARS-CoV-2/NSP14P203L | –10.85 ± 0.61 | –9.09 ± 0.16 | –29.09 ± 0.20 | –14.52 ± 0.13 | |
SARS-CoV-2/NSP14F233L | –26.70 ± 0.73 | –7.68 ± 0.17 | –28.75 ± 0.19 | –15.34 ± 0.16 | |
SARS-CoV-2/NSP14L177F | –21.46 ± 46 | –8.65 ± 0.16 | –30.81 ± 0.22 | –15.11 ± 0.18 | |
SARS-CoV-2/NSP14triple | –21.39 ± 0.71 | –7.85 ± 0.16 | –30.48 ± 0.21 | –15.62 ± 0.13 | |
SARS-CoV | –22.30 ± 0.80 | –8.85 ± 0.16 | –30.35 ± 0.24 | –16.41 ± 0.15 | |
MERS-CoV | –25.53 ± 0.76 | –5.23 ± 0.76 | –31. 90 ± 0.21 | –17.74 ± 0.16 |
The per-residue energy decomposition analysis was carried out using the last 20 ns MD trajectory of the three sets of MD simulation.