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. 2022 Aug 24;22:704. doi: 10.1186/s12879-022-07687-7

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Core genome phylogeny of the KoSC. Left, maximum-likelihood core genome phylogeny (midpoint rooted) of all 92 sequenced isolates in this study, with tips coloured by species. Scale indicates substitutions per site. STs with ≥ 2 members are labelled. Black stars indicate isolates with completed genomes. Heatmap shows presence (coloured) or absence (white) of the virulence loci kleboxymycin and yersiniabactin (as per legend), in addition to resistance to third-generation cephalosporins, key AMR mutations and genes (coloured by mutation type or resistance gene class as per legend). Barchart indicates total number of acquired AMR genes per isolate