TABLE 2.

List of viruses identified in melon and associated weeds by HTS

Reference ID	Virus	Acronym	Segment	Virus length	MPa	ADb	PCc
Melon
MN398900	Cucumis melo alphaendornavirus	CmEV		15,084	111,371	868.23	99.95
NC_002034	Cucumber mosaic virus	CMV	RNA1	3,357	591,932	7,573.84	99.70
NC_002035			RNA2	3,050	863,649	7,620.99	99.70
NC_001440			RNA3	2,216	1,888,683	7,581.22	100.00
NC_001504	Melon necrotic spot virus	MNSV		4,266	6,024	187.98	99.08
NC_001556	Tobacco mild green mosaic virus	TMGMV		6,355	128	3.52	66.89
NC_003688	Cucurbit aphid -borne yellows virus	CABYV		5,669	351,189	6,478.45	99.82
NC_004611	Tomato leaf curl New Delhi virus	ToLCNDV	DNA-A	2,739	69,863	2,902.98	100.00
NC_004612			DNA-B	2,696	7,828	450.81	74.03
NC_006262	Watermelon mosaic virus	WMV		10,035	2,728,171	7,428.15	99.30
NC_018173	Cucurbit chlorotic yellows virus	CCYV	RNA1	8,607	1,501	21.15	99.17
NC_018174			RNA2	8,041	3,893	62.21	99.63
E. elaterium (yr 2020)
NC_001556	Tobacco mild green mosaic virus	TMGMV		6,355	722	13.64	76.74
NC_003688	Cucurbit aphid borne yellows virus	CABYV		5,669	631,106	6,570.95	99.29
NC_003743.1	Turnip yellows virus	TuYV		5,641	56,381	2,307.51	30.79
NC_004611	Tomato leaf curl new Delhi virus	ToLCNDV	DNA-A	2,739	131,442	4,174.19	100.00
NC_004612			DNA-B	2,696	31,148	1,733.61	75.37
NC_004809.1	Cucurbit yellow stunting disorder virus	CYSDV	RNA 1	9,123	5,270	76.00	99.25
NC_004810.1			RNA 2	7,976	13,720	210.78	99.68
E. elaterium (yr 2021)
NC_001556	Tobacco mild green mosaic virus	TMGMV		6,355	504	6.66	5.28
NC_003688	Cucurbit aphid borne yellows virus	CABYV		5,669	667,898	14,077.18	98.00
NC_003743.1	Turnip yellows virus	TuYV		5,641	127,479	1,859.56	28.32
NC_004611	Tomato leaf curl new Delhi virus	ToLCNDV	DNA-A	2,739	244,070	10,825.60	100.00
NC_004612			DNA-B	2,696	52,938	1,928.22	75.29
NC_004809.1	Cucurbit yellow stunting disorder virus	CYSDV	RNA 1	9,123	38,161	548.77	98.85
NC_004810.1			RNA 2	7,976	108,553	1,729.99	99.72
S. nigrum
NC_001616	Potato virus Y	PVY		9,704	977,131	6,166.02	98.80
NC_003828.1	Tomato yellow leaf curl Sardinia virus	TYLCSV		2,773	142	5.62	61.37
NC_020073.2	Moroccan pepper virus	MPV		4,772	223	7.24	80.28
NC_034240	Tomato yellow mottle associated virus	ToYMaV		13,389	18,933	665.20	9.45
M. sylvestris
MN116683.1	Malva vein clearing virus	MVCV		9,659	661,235	5,939.87	96.38
NC_001616	Potato virus Y	PVY		9,704	728	10.36	81.20
NC_011058	Chickpea chlorotic dwarf virus	CpCDV		2,584	5,883	324.41	65.78
NC_025389	Eggplant mottled dwarf virus	EMDV		13,100	23,700	220.00	91.71
NC_034240	Tomato yellow mottle-associated virus	ToYMaV		13,389	145	7.78	3.89

^aNumber of reads mapped (MP) to the virus genome.

^bAverage depth (AD) of reads mapped to the virus genome.

^cPercentage (PC) of virus genome covered by the reads.