. 2022 Jul 30;11(8):1031. doi: 10.3390/antibiotics11081031

Table 2.

Features, molecular typing, resistance profile, virulence-associated factors, and plasmid replicon types carried in E. coli isolate EC13655 from Egypt.

Serotype ^a	Phylogroup ^b	Sequence Type (ST) ^c	Clonotype ^d	Resistance Profile ^e		Virulence ^f		Plasmid Replicon Type ^h
Serotype ^a	Phylogroup ^b	Sequence Type (ST) ^c	Clonotype ^d	Antimicrobial Class	ARGs and Point Mutations	Virulence-Associated Genes ^g	Heavy Metal Resistance Genes	Plasmid Replicon Type ^h
O8:H9	Group A	410	CH4-24	β-lactams	bla_TEM-1B, bla_OXA-1, bla_CTX-M-15, bla_NDM-5, bla_CMY-2	gadECWX lpfA uspABCDEF hlyD, hlyE hha hmsP gspAC-H, gspJKLMO	terC silABCPRS pcoABCDRS nikABCDER arsBC zntA	Col(BS512) IncFIA IncFIB IncFII IncQ1 p0111
				Aminoglycosides	aadA2, aadA5, aac(6′)-Ib-cr, aph(3″)-Ib, aph(6)-Id, aac(3)-IId
				Amphenicol	catB3
				Quinolones	aac(6′)-Ib-cr, gyrAS83L, gyrA D87N, parC S80I, parE S458A
				Macrolide	mph(A)
				Folate pathway antagonist	sul1, sul2, dfrA12, dfrA17
				Tetracycline	tetB, tetC

^a Data obtained from SerotypeFinder v2.0. ^b based on the ClermonTyping method. ^c ST: sequence type, data obtained from MLST v2.0. ^d Clonotype: determined according to fumC-fimH alleles, data obtained from CHTyper v1.0. ^e ARGs: antimicrobial resistance genes and point mutations, as obtained from ResFinder v4.1. Mutations detected in gyrA, parC, and parE are in bold format. ^f Virulence determinants and heavy metal resistance genes as obtained from the VirulenceFinder v2.0. ^g These virulence-associated genes are the signature genes of phylogroup A ST410. ^h Data represents plasmid incompatibility (Inc.) group designations as determined by PlasmidFinder v2.0.