Table 4.
List of differentially enriched regions within the confidence interval of QTL FomCH11. For each region, extension, number of annotated genes, number of genes annotated as resistance genes and details for each best candidate gene according to the annotation in eggplant genome V3 [35] are reported.
| Diff. Enriched Region | Physical Interval in V3 | Number of Annotated Genes | Number of Resistance Genes | Gene ID According to Gene Annotation by BARCHI et al. [35] |
|---|---|---|---|---|
| A | 65,030–65,120 Mb | 2 | 2 | SMEL_011g374890.1 Similar to At1g58602: Probable disease resistance protein At1g58602 (A. thaliana) |
| SMEL_011g374900.1 Similar to RPP13: Disease resistance protein RPP13 (A. thaliana) | ||||
| B | 65,532–65,553 Mb | 2 | 2 | SMEL_011g375310.1 Similar to RPP13: Disease resistance protein RPP13 (A. thaliana) |
| SMEL_011g375320. 1 Similar to RPP13: Disease resistance protein RPP13 (A. thaliana) | ||||
| C | 66,920–67,557 Mb | 31 | 0 | |
| D | 68,093–68,171 Mb | 7 | 3 | SMEL_011g376860.1 Similar to XA21: Receptor kinase-like protein Xa21 (O. Sativa subsp. Indica) |
| SMEL_011g376900.1 Similar to FLS2: LRR receptor-like serine/threonine-protein kinase FLS2 (A. thaliana) | ||||
| SMEL_011g376910.1 Similar to FLS2: LRR receptor-like serine/threonine-protein kinase FLS2 (A. thaliana) | ||||
| E | 69,366–69,410 Mb | 7 | 2 | SMEL_011g377340.1 Similar to R1A: Late blight resistance protein R1-A (S. demissum) |
| SMEL_011g377380.1 Similar to R1C-3: Putative late blight resistance protein homolog R1C-3 (S. demissum) |