Table 1.
Parameter | Interquartile ranges |
Refs. |
---|---|---|
Time between bursts (1/kON) | 67, 70 | |
Burst duration (1/kOFF) | 67, 70 | |
mRNA half-life | 65, 69, 81 | |
Protein half-life | 69 | |
Burst size | 55, 67, 74 | |
Translation rate | 65, 69 |
Derived from literature, where parameters were estimated and inferred from published experimental data. Lines represent first quartile, median, and third quartile values for TFs (blue) and non-TFs (red), respectively. Burst sizes used in simulations were based on previously published smFISH-based copy numbers, although we note that scRNA-seq data-based estimates are lower due to transcript capture inefficiencies (88–90). kon = burst frequency; koff = number of burst ends per hour.