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. 2022 Aug 15;119(34):e2207392119. doi: 10.1073/pnas.2207392119

Table 1.

Range of intrinsic parameter values for TFs and non-TF genes

Parameter Interquartile ranges
Inline graphic
Refs.
Time between bursts (1/kON) graphic file with name pnas.2207392119fig06.jpg 67, 70
Burst duration (1/kOFF) graphic file with name pnas.2207392119fig07.jpg 67, 70
mRNA half-life graphic file with name pnas.2207392119fig08.jpg 65, 69, 81
Protein half-life graphic file with name pnas.2207392119fig09.jpg 69
Burst size graphic file with name pnas.2207392119fig10.jpg 55, 67, 74
Translation rate graphic file with name pnas.2207392119fig11.jpg 65, 69

Derived from literature, where parameters were estimated and inferred from published experimental data. Lines represent first quartile, median, and third quartile values for TFs (blue) and non-TFs (red), respectively. Burst sizes used in simulations were based on previously published smFISH-based copy numbers, although we note that scRNA-seq data-based estimates are lower due to transcript capture inefficiencies (8890). kon = burst frequency; koff = number of burst ends per hour.