Table 1.
Range of intrinsic parameter values for TFs and non-TF genes
Parameter | Interquartile ranges![]() |
Refs. |
---|---|---|
Time between bursts (1/kON) |
![]() |
67, 70 |
Burst duration (1/kOFF) |
![]() |
67, 70 |
mRNA half-life |
![]() |
65, 69, 81 |
Protein half-life |
![]() |
69 |
Burst size |
![]() |
55, 67, 74 |
Translation rate |
![]() |
65, 69 |
Derived from literature, where parameters were estimated and inferred from published experimental data. Lines represent first quartile, median, and third quartile values for TFs (blue) and non-TFs (red), respectively. Burst sizes used in simulations were based on previously published smFISH-based copy numbers, although we note that scRNA-seq data-based estimates are lower due to transcript capture inefficiencies (88–90). kon = burst frequency; koff = number of burst ends per hour.