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. 2022 Aug 16;13(8):1454. doi: 10.3390/genes13081454

Table 2.

Summary information of significant additive SNPs for ADG, AGE, BF, and LMD.

Trait SNP Chr Location (bp) Allele MAF p-Value % DEBV Nearest Gene Distance (bp)
ADG CNCB10006667 9 41,538,619 C/T 0.086 8.95 × 10−6 0.83 HTR3B Within
CNCB10006791 9 67,900,715 C/T 0.086 9.09 × 10−6 0.83 CD55 +32,354
CNCB10006792 9 67,967,237 A/G 0.086 9.09 × 10−6 0.83 CD55 −6855
AGE CNCB10001620 2 20,310,474 A/G 0.216 1.59 × 10−5 0.78 / /
CNCB10006667 9 41,538,619 C/T 0.086 2.07 × 10−5 0.76 HTR3B Within
CNCB10006791 9 67,900,715 C/T 0.086 2.68 × 10−5 0.74 CD55 +32,354
CNCB10006792 9 67,967,237 A/G 0.086 2.68 × 10−5 0.74 CD55 −6855
BF CNCB10010792 15 89,052,971 G/A 0.051 7.89 × 10−6 0.84 / /
CNCB10005591 7 113,533,476 T/G 0.074 9.44 × 10−6 0.82 TRIP11 Within
rs81433919 12 33,673,968 G/A 0.116 1.74 × 10−5 0.77 MSI2 Within
CNCB10008592 13 45,621,675 G/A 0.072 2.45 × 10−5 0.75 PRICKLE2 Within
LMD rs709317845 7 97,614,602 T/G 0.469 1.33 × 10−6 0.98 VRTN +105
CNC11071978 7 97,615,897 A/G 0.469 1.33 × 10−6 0.98 VRTN Within

AGE: adjusted age at 100 kg, AGE: average daily gain, BF: backfat thickness, LMD: loin muscle depth, Chr: chromosome, Location: SNP position in Ensembl, % DEBV: percentage of DEBV variance explained by the SNP, Distance: distance between the nearest gene and the corresponding significant SNP.