Table 2.
Trait | SNP | Chr | Location (bp) | Allele | MAF | p-Value | % DEBV | Nearest Gene | Distance (bp) |
---|---|---|---|---|---|---|---|---|---|
ADG | CNCB10006667 | 9 | 41,538,619 | C/T | 0.086 | 8.95 × 10−6 | 0.83 | HTR3B | Within |
CNCB10006791 | 9 | 67,900,715 | C/T | 0.086 | 9.09 × 10−6 | 0.83 | CD55 | +32,354 | |
CNCB10006792 | 9 | 67,967,237 | A/G | 0.086 | 9.09 × 10−6 | 0.83 | CD55 | −6855 | |
AGE | CNCB10001620 | 2 | 20,310,474 | A/G | 0.216 | 1.59 × 10−5 | 0.78 | / | / |
CNCB10006667 | 9 | 41,538,619 | C/T | 0.086 | 2.07 × 10−5 | 0.76 | HTR3B | Within | |
CNCB10006791 | 9 | 67,900,715 | C/T | 0.086 | 2.68 × 10−5 | 0.74 | CD55 | +32,354 | |
CNCB10006792 | 9 | 67,967,237 | A/G | 0.086 | 2.68 × 10−5 | 0.74 | CD55 | −6855 | |
BF | CNCB10010792 | 15 | 89,052,971 | G/A | 0.051 | 7.89 × 10−6 | 0.84 | / | / |
CNCB10005591 | 7 | 113,533,476 | T/G | 0.074 | 9.44 × 10−6 | 0.82 | TRIP11 | Within | |
rs81433919 | 12 | 33,673,968 | G/A | 0.116 | 1.74 × 10−5 | 0.77 | MSI2 | Within | |
CNCB10008592 | 13 | 45,621,675 | G/A | 0.072 | 2.45 × 10−5 | 0.75 | PRICKLE2 | Within | |
LMD | rs709317845 | 7 | 97,614,602 | T/G | 0.469 | 1.33 × 10−6 | 0.98 | VRTN | +105 |
CNC11071978 | 7 | 97,615,897 | A/G | 0.469 | 1.33 × 10−6 | 0.98 | VRTN | Within |
AGE: adjusted age at 100 kg, AGE: average daily gain, BF: backfat thickness, LMD: loin muscle depth, Chr: chromosome, Location: SNP position in Ensembl, % DEBV: percentage of DEBV variance explained by the SNP, Distance: distance between the nearest gene and the corresponding significant SNP.