Table 3.
Trait | SNP | Chr | Location (bp) | Allele | MAF | p-Value | % DEBV | Nearest Gene | Distance (bp) |
---|---|---|---|---|---|---|---|---|---|
AGE | CNC10133718 | 13 | 179,900,741 | C/T | 0.285 | 1.60 × 10−5 | 0.78 | NRIP1 | Within |
rs81441574 | 13 | 180,051,342 | T/C | 0.364 | 2.90 × 10−5 | 0.73 | NRIP1 | −135,116 | |
rs80867343 | 13 | 180,004,272 | G/A | 0.362 | 2.98 × 10−5 | 0.73 | NRIP1 | −88,046 | |
BF | rs81373550 | 3 | 93,497,234 | A/G | 0.061 | 1.85 × 10−6 | 0.95 | TTC7A | Within |
CNCB10002800 | 3 | 97,223,093 | T/C | 0.149 | 2.03 × 10−6 | 0.95 | ZFP36L2 | +19,999 | |
rs81373610 | 3 | 93,655,118 | A/C | 0.060 | 2.80 × 10−6 | 0.92 | MCFD2 | +22,100 | |
rs80966590 | 3 | 93,722,940 | C/T | 0.060 | 2.80 × 10−6 | 0.92 | SOCS5 | −54,462 | |
rs81475091 | 3 | 93,732,314 | G/A | 0.060 | 2.80 × 10−6 | 0.92 | SOCS5 | −45,088 | |
rs81299554 | 3 | 93,771,724 | A/G | 0.060 | 2.80 × 10−6 | 0.92 | SOCS5 | −5678 | |
rs81373642 | 3 | 93,828,846 | C/T | 0.060 | 2.80 × 10−6 | 0.92 | SOCS5 | Within | |
rs81373648 | 3 | 93,902,023 | G/T | 0.060 | 2.80 × 10−6 | 0.92 | SOCS5 | Within | |
rs81373727 | 3 | 94,084,767 | A/G | 0.060 | 3.36 × 10−6 | 0.91 | TMEM247 | +17,743 | |
rs81373716 | 3 | 94,110,331 | G/A | 0.060 | 3.36 × 10−6 | 0.91 | TMEM247 | +43,307 | |
rs81373744 | 3 | 94,163,788 | G/A | 0.060 | 3.36 × 10−6 | 0.91 | EPAS1 | −3971 | |
rs81213041 | 3 | 93,394,317 | G/A | 0.059 | 4.80 × 10−6 | 0.88 | STPG4 | Within | |
rs81373880 | 3 | 94,599,697 | C/T | 0.075 | 2.09 × 10−5 | 0.76 | PRKCE | Within | |
CNC10070016 | 7 | 834,427 | A/C | 0.430 | 2.57 × 10−5 | 0.74 | GMDS | Within | |
CNC10120338 | 12 | 16,082,351 | T/C | 0.488 | 3.13 × 10−5 | 0.73 | MRC2 | Within | |
LMD | rs80785395 | 14 | 133,966,414 | A/G | 0.087 | 6.14 × 10−7 | 1.04 | LHPP | Within |
CNCB10007305 | 10 | 4,667,593 | A/G | 0.094 | 1.19 × 10−5 | 0.80 | / | / | |
rs81304718 | 15 | 7,424,079 | C/T | 0.091 | 2.21 × 10−5 | 0.76 | ZEB2 | −74,800 | |
CNCB10010367 | 15 | 8,203,810 | A/G | 0.060 | 2.34 × 10−5 | 0.75 | ARHGAP15 | Within |
AGE: adjusted age at 100 kg, AGE: average daily gain, BF: backfat thickness, LMD: loin muscle depth, Chr: chromosome, Location: SNP position in Ensembl, % DEBV: percentage of DEBV variance explained by the SNP, Distance: distance between the nearest gene and the corresponding significant SNP.