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. 2022 Aug 16;13(8):1454. doi: 10.3390/genes13081454

Table 3.

Summary information of significant dominance SNPs for AGE, BF, and LMD.

Trait SNP Chr Location (bp) Allele MAF p-Value % DEBV Nearest Gene Distance (bp)
AGE CNC10133718 13 179,900,741 C/T 0.285 1.60 × 10−5 0.78 NRIP1 Within
rs81441574 13 180,051,342 T/C 0.364 2.90 × 10−5 0.73 NRIP1 −135,116
rs80867343 13 180,004,272 G/A 0.362 2.98 × 10−5 0.73 NRIP1 −88,046
BF rs81373550 3 93,497,234 A/G 0.061 1.85 × 10−6 0.95 TTC7A Within
CNCB10002800 3 97,223,093 T/C 0.149 2.03 × 10−6 0.95 ZFP36L2 +19,999
rs81373610 3 93,655,118 A/C 0.060 2.80 × 10−6 0.92 MCFD2 +22,100
rs80966590 3 93,722,940 C/T 0.060 2.80 × 10−6 0.92 SOCS5 −54,462
rs81475091 3 93,732,314 G/A 0.060 2.80 × 10−6 0.92 SOCS5 −45,088
rs81299554 3 93,771,724 A/G 0.060 2.80 × 10−6 0.92 SOCS5 −5678
rs81373642 3 93,828,846 C/T 0.060 2.80 × 10−6 0.92 SOCS5 Within
rs81373648 3 93,902,023 G/T 0.060 2.80 × 10−6 0.92 SOCS5 Within
rs81373727 3 94,084,767 A/G 0.060 3.36 × 10−6 0.91 TMEM247 +17,743
rs81373716 3 94,110,331 G/A 0.060 3.36 × 10−6 0.91 TMEM247 +43,307
rs81373744 3 94,163,788 G/A 0.060 3.36 × 10−6 0.91 EPAS1 −3971
rs81213041 3 93,394,317 G/A 0.059 4.80 × 10−6 0.88 STPG4 Within
rs81373880 3 94,599,697 C/T 0.075 2.09 × 10−5 0.76 PRKCE Within
CNC10070016 7 834,427 A/C 0.430 2.57 × 10−5 0.74 GMDS Within
CNC10120338 12 16,082,351 T/C 0.488 3.13 × 10−5 0.73 MRC2 Within
LMD rs80785395 14 133,966,414 A/G 0.087 6.14 × 10−7 1.04 LHPP Within
CNCB10007305 10 4,667,593 A/G 0.094 1.19 × 10−5 0.80 / /
rs81304718 15 7,424,079 C/T 0.091 2.21 × 10−5 0.76 ZEB2 −74,800
CNCB10010367 15 8,203,810 A/G 0.060 2.34 × 10−5 0.75 ARHGAP15 Within

AGE: adjusted age at 100 kg, AGE: average daily gain, BF: backfat thickness, LMD: loin muscle depth, Chr: chromosome, Location: SNP position in Ensembl, % DEBV: percentage of DEBV variance explained by the SNP, Distance: distance between the nearest gene and the corresponding significant SNP.