Table 3.

Abundance of the top 100 bacterial species

No.	Organism	Abundance	No.	Organism	Abundance
1	Actinomyces sp. ICM47	0.0003	26	Bifidobacterium catenulatum	0.027
2	Akkermansia muciniphila	0.006	27	Bifidobacterium kashiwanohense	0.015
3	Alistipes ihumii	0.006	28	Bifidobacterium longum	0.021
4	Alistipes onderdonkii	0.008	29	Bifidobacterium merycicum	0.001
5	Alistipes putredinis	0.026	30	Bifidobacterium pseudocatenulatum	0.02
6	Alistipes shahii	0.008	31	Bifidobacterium sp. 12_1_47 BFAA	0.02
7	Anaerostipes hadrus	0.013	32	Blautia obeum	0.013
8	Bacteroides caccae	0.005	33	Blautia sp. KLE 1732	0.02
9	Bacteroides clarus	0.002	34	Blautia wexlerae	0.03
10	Bacteroides dorei	0.01	35	Catenibacterium mitsuokai	0.004
11	Bacteroides faecis	0.003	36	Christensenella minuta	0.002
12	Bacteroides fragilis	0.011	37	Christensenella timonensis	0.002
13	Bacteroides intestinalis	0.003	38	Clostridiales bacterium VE202-14	0.005
14	Bacteroides ovatus	0.01	39	Clostridium saudiense	0.0004
15	Bacteroides sp. 3_1_40 A	0.006	40	Clostridioides difficile	0.003
16	Bacteroides sp. 4_3_47 FAA	0.003	41	Clostridium sp. L2-50	0.003
17	Bacteroides sp. D20	0.003	42	Clostridium sp. SS2/1	0.007
18	Bacteroides uniformis	0.027	43	Collinsella aerofaciens	0.011
19	Bacteroides vulgatus	0.014	44	Collinsella sp. 4_8_47 FAA	0.011
20	Bacteroides massiliensis	0.001	45	Coprococcus catus	0.005
21	Bacteroides pyogenes	0.0002	46	Coprococcus comes	0.01
22	Barnesiella intestinihominis	0.005	47	Coprococcus eutactus	0.0034
23	Bifidobacterium adolescentis	0.051	48	Coprococcus sp. ART55/1	0.007
24	Bifidobacterium angulatum	0.01	49	Desulfovibrio piger	0.001
25	Bifidobacterium animalis	0.02	50	Dialister invisus	0.01
No.	Organism	Abundance	No.	Organism	Abundance
51	Dialister succinatiphilus	0.011	76	Parabacteroides sp. 20_3	0.001
52	Dorea formicigenerans	0.01	77	Parabacteroides sp. D13	0.004
53	Dorea longicatena	0.021	78	Paraprevotella clara	0.001
54	Dorea sp. AGR2135	0.004	79	Phascolarctobacterium sp. CAG: 207	0.001
55	Eggerthella sp. HGA1	0.004	80	Prevotella copri	0.031
56	Erysipelotrichaceae bacterium 21_3	0.001	81	Prevotella stercorea	0.001
57	Erysipelotrichaceae bacterium 6_1_45	0.001	82	Roseburia hominis	0.005
58	Escherichia coli	0.003	83	Roseburia intestinalis	0.003
59	Eubacterium ramulus	0.004	84	Roseburia inulinivorans	0.01
60	Eubacterium ventriosum	0.001	85	Ruminococcus bicirculans	0.004
61	Faecalibacterium prausnitzii	0.048	86	Ruminococcus bromii	0.017
62	Gordonibacter pamelaeae	0.001	87	Ruminococcus callidus	0.004
63	Holdemanella biformis	0.004	88	Ruminococcus lactaris	0.003
64	Intestinibacter bartlettii	0.002	89	Ruminococcus sp. 5_1_39 BFAA	0.027
65	Lachnospiraceae bacterium 1_1_57 FAA	0.002	90	Ruminococcus sp. SR1/5	0.008
66	Lachnospiraceae bacterium 3_1_46 FAA	0.001	91	Senegalimassilia anaerobia	0.003
67	Lachnospiraceae bacterium 5_1_63 FAA	0.012	92	Streptococcus thermophilus	0.020
68	Lachnospiraceae bacterium 8_1_57 FAA	0.002	93	Subdoligranulum sp. 4_3_54 A2 FAA	0.005
69	Lactobacillus ruminis	0.002	94	Subdoligranulum variabile	0.001
70	Megasphaera sp. BL7	0.001	95	Sutterella wadsworthensis	0.0002
71	Megasphaera elsdenii 1.2505	0.002	96	Tannerella sp. 6_1_58 FAA_CT1	0.0001
72	Odoribacter splanchnicus	0.002	97	Tyzzerella nexilis	0.001
73	Oscillospiraceae bacterium VE202-24	0.001	98	Veillonella dispar	0.001
74	Parabacteroides distasonis	0.004	99	Veillonella parvula	0.001
75	Parabacteroides merdae	0.010	100	Veillonella sp. 6_1_27	0.001