AGO	argonaute
ARHGAP35	Rho GTPase activating protein 35
ATM	ataxia-telangiectasia mutated
ATR	ataxia-telangiectasia and Rad3-related protein
bHLH	basic helix-loop-helix
C2H2	two invariant pairs of cysteines and histidines
CASC9	cancer susceptibility 9
CCL2	chemokine (C-C motif) ligand 2
CDC5L	cell division cycle 5-like protein
CH	cysteine-histidine-rich domain
CHD3	chromodomain helicase DNA binding protein 3
CHTOP	chromatin target of protein arginine methyltransferase 1
CNV	copy number variations
CRC	colorectal cancer
CSD	cold shock domain
CSPs	cold shock domain proteins
CTCF	CCCTC-binding factor
CTE	C-terminal extension domain)
DBPs	DNA binding proteins
DDX	Asp-Glu-X-Asp-box RNA helicase
DHX	Asp-Glu-X-His-box RNA helicase
DNA-PK	DNA-dependent protein kinase
DRBPs	DNA and RNA binding proteins
dsRBD	double-stranded RNA-binding domain
dsRNA	double-stranded
E3RS	a receptor subunit of beta-TrCP ubiquitin E3 ligase
ENPD	Eukaryotic Nucleic Acid Binding Protein Database
FAH	fumarylacetoacetate hydrolase
G4	G-quadruplex
GO	Gene Ontology
GQSY	glycine-rich motifs
HCC	hepatocellular carcinoma
HMG	high mobility group
HNF4A	hepatocyte nuclear factor 4 alpha
HNRNPL	heterogeneous nuclear ribonucleoprotein L
HNRNPU	heterogeneous nuclear ribonucleoprotein U
HOX	homeodomain complexes
HTH	helix-turn-helix
IFI16	IFN-γ-inducible protein-16
ILF2	interleukin enhancer-binding factor 2
ILF3	interleukin enhancer-binding factor 3
KH	K homology domain
lncRNAs	long non-coding RNAs
LNMAT1	by lymph node metastasis associated transcript 1
MAR	matrix-associated region
NEAT1	nuclear-enriched abundant transcript 1
NLS	nuclear localization site
NMD	nonsense-mediated mRNA decay
NMD	nonsense-mediated mRNA decay
NORAD	non-coding RNA activated by DNA damage
NSCLC	non-small-cell lung carcinoma
NuRD	nucleosome remodeling and histone deacetylase
PERK1	proline-rich receptor-like protein kinase 1
PIN	PilT N-terminus domain
PRKDC	DNA-dependent protein kinase catalytic subunit
PTEN	phosphatase and tensin homolog gene
RBAT1	retinoblastoma associated transcript-1
RBMX	RNA-binding motif protein X-linked
RBPDB	RNA-Binding Protein Database
RBPs	RNA binding proteins
RecA	recombinase A-like
RGG	Arg-Gly-Gly region
RISC	RNA-induced silencing complex
RNAi	RNA interference
RNP	ribonucleoprotein
RRMs	RNA-recognition motifs
RT	reverse transcriptase
SMG1	serin/threonin-protein kinase 1
SMG5	serin/threonin-protein kinase 5
SOX2	sex determining region Y-box 2
SQ	rich in serine and glutamine
ssRNA	single-stranded
TADs	transcription activation domains
TCP80	translational control protein 80
TEN	telomerase essential N-terminal domain
TFIIIA	transcription factor
TFs	transcription factors
TOP1	topoisomerase I
TOP2A	topoisomerase II alpha
TRA2B	transformer 2 beta homolog
TRA2β4	transformer 2-beta
TRBD	telomerase RNA-binding domain
TREX	multiprotein transcription-export complex
UPF1	regulator of nonsense transcripts 1
WT1	Wilms’ tumor
YB-1	Y-box binding protein 1
ZIP	leucine zipper