Table 1.

RNA-As-Graphs (RAG) developments.

Year	RAG Development	Refs.
2003	Launch of RAG: planar tree and dual graphs	[12]
2011	RNA junction coaxial stacking prediction	[26]
2014	Tree graph partitioning using Fiedler vectors	[18]
2014	RAG 3D tree graph: sampling RNA 3D structures	[13]
2015	Laplacian spectrum based graph feature selection and clustering	[15]
2015	RAG-3D Database: searching for similar RNA fragments	[22]
2017	Fragment assembly (F-RAG): generating atomic models for tree graphs	[20]
2017	Dual graph partitioning algorithm	[19]
2018	Novel RNA motif design pipeline	[17]
2019	Extended dual graph library and RAG-3Dual database	[14]
2020	Tree graph inverse folding (RAG-IF)	[21]
2021	Fiedler vector based graph feature selection and scoring	[16]
2021	Dual graph inverse folding (Dual-RAG-IF) and	[23]
	SARS-CoV-2 frameshifting element (FSE) conformational landscape	[24]
2022	SARS-CoV-2 FSE dynamics and Coronavirus conformational landscape	[25,27]