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. 2022 Aug 20;23(16):9411. doi: 10.3390/ijms23169411

Table 2.

P. distasonis genes sharing synteny with reference genes and auto-assigned as part of CPS, fimbriae or pili synthesis.

Structure Reference Gene Pdist Strain Label Length (aa) Automatic Assignation of Biological Function % Homology
Capsule up(a-g)Y No match
up(a-g)Z No match
uphY CS12 PDI_v1_160022 185 Transcription antitermination protein UpdY 36.90
CL09T03C24 AGZN01_v1_510002 192 Transcription antitermination protein UpdY 36.00
CS4 PDI_v1_220060 192 Transcription antitermination protein UpdY 36.00
FDAARGOS_615 FOB23_12755 179 UpxY family transcription antiterminator 33.72
APCS2/PD FQN59_13885 179 UpxY family transcription antiterminator 33.70
CS2 PDI_v1_140109 179 Transcription antitermination protein UpdY 33.70
CS5 PDI_v1_140028 179 Transcription antitermination protein UpdY 33.70
CS6 PDI_v1_170031 179 Transcription antitermination protein UpdY 33.70
CS8 PDI_v1_150106 179 Transcription antitermination protein UpdY 33.70
CS15 PDI_v1_340019 179 Transcription antitermination protein UpdY 33.70
CL03T12C09 AGZM01_v1_20031 179 Transcription antitermination protein UpdY 33.14
FDAARGOS_759 FIU22_01625 179 UpxY family transcription antiterminator 33.14
82G9 E0E49_RS00075 179 UpxY family transcription antiterminator 33.14
CS1 PDI_v1_140105 179 Transcription antitermination protein UpdY 33.10
CS7 PDI_v1_130113 179 Transcription antitermination protein UpdY 33.10
upgZ No match
Fimbriae fimA 82G9 E0E49_RS19850 444 fimbrial protein 26.21
ATCC 8503T BDI_3514 444 putative fimbrial protein precursor 25.99
CavFT-hAR46 FE931_00755 444 fimbrial protein 25.99
FDAARGOS_759 FIU22_19490 444 fimbrial protein 25.99
CS6 PDI_v1_70115 432 Fimbrial protein 25.60
CS13 PDI_v1_70087 432 Fimbrial protein 25.60
CL11T00C22 INE94_02450 431 Major fimbrium subunit FimA type-2 25.30
CS12 PDI_v1_10340 431 Major fimbrial subunit protein (FimA) 25.10
CS1 PDI_v1_20076 434 Major fimbrial subunit protein type II 24.90
CS2 PDI_v1_300040 419 Fimbrial protein 24.20
CS15 PDI_v1_330008 419 Fimbrial protein 24.20
CS20 PDI_v1_10539 419 Fimbrial protein 24.20
APCS2/PD FQN59_10875 419 fimbrial protein 24.10
CS4 PDI_v1_10167 419 Fimbrial protein 24.10
CL06T03C10 INE86_01122 420 Major fimbrium subunit FimA type-2 24.00
CS18 PDI_v1_50210 420 Fimbrial protein 24.00
CS8 PDI_v1_30239 421 P_gingi_FimA domain-containing protein 23.70
CS5 PDI_v1_240063 421 P_gingi_FimA domain-containing protein 23.70
CS17 PDI_v1_20464 421 P_gingi_FimA domain-containing protein 23.70
FDAARGOS_1234 I6J64_10580 421 fimbrial protein 23.50
CS7 PDI_v1_30250 437 Fimbrial protein 23.20
fimB 82G9 E0E49_RS19870 303 FimB/Mfa2 family fimbrial subunit 29.90
CBBP-1 HHO38_19050 303 FimB/Mfa2 family fimbrial subunit 29.90
CL06T03C10 INE86_01123 303 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 29.90
FDAARGOS_1234 I6J64_10575 303 FimB/Mfa2 family fimbrial subunit 29.90
FDAARGOS_759 FIU22_19510 303 FimB/Mfa2 family fimbrial subunit 29.90
CS1 PDI_v1_20075 303 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 29.90
CS6 PDI_v1_70114 303 FimB/Mfa2 family fimbrial subunit 29.90
CS12 PDI_v1_10341 305 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 29.90
CS13 PDI_v1_70088 303 FimB/Mfa2 family fimbrial subunit 29.90
CL11T00C22 INE94_02449 305 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 29.00
fimC CL11T00C22 INE94_02448 375 Putative fimbrium tip subunit Fim1C 22.50
fimD CS2 PDI_v1_10054 684 P_gingi_FimA domain-containing protein 26.40
CS15 PDI_v1_140036 684 P_gingi_FimA domain-containing protein 26.40
CS12 PDI_v1_60229 685 P_gingi_FimA domain-containing protein 26.10
CS17 PDI_v1_40059 685 P_gingi_FimA domain-containing protein 26.10
CS18 PDI_v1_40032 685 P_gingi_FimA domain-containing protein 26.10
CL03T12C09 AGZM01_v1_210059 684 P_gingi_FimA domain-containing protein 26.02
CS5 PDI_v1_120056 675 P_gingi_FimA domain-containing protein 25.70
CS8 PDI_v1_160055 675 P_gingi_FimA domain-containing protein 25.70
CS4 PDI_v1_100056 677 P_gingi_FimA domain-containing protein 25.10
CL09T03C24 AGZN01_v1_280002 678 P_gingi_FimA domain-containing protein 24.76
fimE CL11T00C22 INE94_03253 632 Major fimbrium tip subunit FimE 27.10
CL06T03C10 INE86_00220 632 Major fimbrium tip subunit FimE 25.30
CBBP-1 HHO38_14390 688 FimB/Mfa2 family fimbrial subunit 23.01
Pilus Bt mfa1 No match
Bt mfa2 FDAARGOS_759 FIU22_05440 350 FimB/Mfa2 family fimbrial subunit 28.98
Pg mfa1 CS12 PDI_v1_130034 509 Fimbrillin_C domain-containing protein 26.50
CS18 PDI_v1_30088 509 Fimbrillin_C domain-containing protein 26.50
CL06T03C10 INE86_02000 392 Minor fimbrium subunit Mfa1 25.40
CL11T00C22 INE94_00002 509 Major fimbrial subunit protein type IV 25.40
Pg mfa2 CL06T03C10 INE86_02001 329 Minor fimbrium anchoring subunit Mfa2 31.20
CL11T00C22 INE94_00003 329 Minor fimbrium anchoring subunit Mfa2 31.20
CS12 PDI_v1_130033 329 FimB/Mfa2 family fimbrial subunit 30.90
CS18 PDI_v1_30089 329 putative Minor fimbrium anchoring subunit Mfa2 30.40
FDAARGOS_759 FIU22_15640 300 FimB/Mfa2 family fimbrial subunit 24.32
82G9 E0E49_RS15860 300 FimB/Mfa2 family fimbrial subunit 24.32
Pg mfa3 No match
Pg mfa4 FDAARGOS_759 FIU22_15635 463 Mfa1 fimbrilin C-terminal domain-containing protein 20.83
ATCC 8503T BDI_2708 463 putative outer membrane protein 20.51
CL03T12C09 AGZM01_v1_210028 463 Fimbrillin_C domain-containing protein 20.51
82G9 E0E49_RS15855 463 Mfa1 fimbrilin C-terminal domain-containing protein 20.20
Pg mfa5 No match

aa: amino acid; Bt: B. thetaiotaomicron; Pg: P. gingivalis..