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. 2022 Aug 5;8(8):820. doi: 10.3390/jof8080820

Table 4.

DNA polymorphism data for F. graminearum isolates based on beta-tubulin (TUB), translation elongation factor 1 alpha (TEF) and histone (HIS) gene sequence comparisons.

Gene Loci Region of Collection Number of Isolates (N) Number of Segregating Sites (S) Number of Haplotypes (H) Haplotype Diversity (Hd) Nucleotide Diversity (π)
TUB PB 47 5 7 0.816 0.013
HR 27 6 10 0.900 0.019
RJ 28 6 11 0.865 0.015
WB 21 6 8 0.838 0.012
Total 123 6 11 0.846 0.015
TEF PB 47 197 12 0.891 0.056
HR 27 195 11 0.883 0.128
RJ 28 197 13 0.939 0.089
WB 21 196 7 0.671 0.061
Total 123 197 15 0.888 0.080
HIS PB 47 7 14 0.920 0.006
HR 27 7 10 0.855 0.005
RJ 28 7 11 0.857 0.004
WB 21 7 10 0.919 0.006
Total 123 7 17 0.893 0.893
Combined loci PB 47 384 23 0.965 0.072
HR 27 381 18 0.972 0.097
RJ 28 385 21 0.981 0.098
WB 21 381 13 0.962 0.070
Total 123 385 30 0.974 0.083

Haplotype diversity and nucleotide diversity are important indicators of population genetic variation. Haplotype and nucleotide diversities are generally considered to be low where haplotype diversity (Hd) and nucleotide diversity (π) are less than 0.5.