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. 2022 Aug 3;50(15):8418–8430. doi: 10.1093/nar/gkac630

Table 1.

Gapmers ASOs used in this study. dN = DNA, +N = LNA, uN = 2′-O-MOE, d5C = 5-methyl-deoxycytosine. All internucleotide linkages were phosphorothioate

Target Oligo name Sequence (5′-3′) Calculated mass Observed mass
NTC NTC_1 +A+A+CdAd5CdGdTd5CdTdAdTdA+C+G+C 4984.1 4983.6
NTC_2 +A+T+TdTdTdAdTdTd5CdGdGdA+G+C+T 4994.0 4994.5
Malat1 Malat1_1 uGuGuGuUuCdAdGdCdTdGdCdCdAdAdTuGuCuUuAuG 7232.1 7232.0
Malat1_2 +G+G+TdCdAdGdCdTdGdCdCdA+A+T+G 4985.9 4985.5
Malat1_3 +C+T+AdGdTdTd5CdAd5CdTdGdAdA+T+G+C 5321.3 5320.5
Cd47 Cd47_4 +G+T+Gd5CdTdTdGdGd5CdGdAdGdT+C+T+C 5369.3 5368.5
Cd98 Cd98_6 +A+C+CdGdGd5Cd5Cd5CdGdAdAdTd5C+T+C+G 5334.4 5334.0
Mfap4 Mfap_4 +C+C+AdTdTdGdGdGd5Cd5Cd5CdAdA+T+T+G 5336.3 5337.3
Adam33 Adam33_1 +T+A+AdGd5CdTd5CdAdGdAdGdT+T+C+G 5027.1 5027.6