Table 3.
Comparison | Base Mean1 |
log2 Fold Change2 |
lfcSE3 | P Value4 |
Padj5 | Taxa |
---|---|---|---|---|---|---|
Day 8 | ||||||
Family level | ||||||
100Gln vs CO | 22.87 | − 21.51 | 2.96 | < 0.0001 | < 0.0001 | Fusobacteriaceae |
Mixed additions vs Glu |
10.78 | 21.06 | 3.41 | < 0.0001 | < 0.0001 | Enterococcaceae |
1989.71 | 2.75 | 0.63 | < 0.0001 | < 0.0001 | Lactobacillaceae | |
7931.63 | − 2.77 | 0.84 | 0.001 | 0.02 | Erysipelotrichaceae | |
Mixed additions vs Gln |
25.76 | 23.38 | 2.14 | < 0.0001 | < 0.0001 | Fusobacteriaceae |
495.19 | − 3.31 | 0.94 | < 0.0001 | 0.001 | Clostridiales_vadinBB60_group | |
Genus level | ||||||
100Glu vs CO | 19.62 | − 21.65 | 2.78 | < 0.0001 | < 0.0001 | Mogibacterium |
9.07 | − 21.07 | 5.28 | < 0.0002 | 0.007 | Selenomonas | |
50Glu + 50Gln vs CO | 6.7 | − 18.56 | 3.91 | < 0.0003 | < 0.0001 | Pelistega |
9.07 | − 21.16 | 5.28 | < 0.0004 | 0.006 | Selenomonas | |
25Glu + 75 Gln vs CO | 9.07 | − 21.96 | 5.14 | < 0.0005 | 0.004 | Selenomonas |
740.85 | − 3.7 | 1 | < 0.0006 | 0.023 | Blautia | |
100Gln vs CO | 34.79 | − 20.86 | 3.03 | < 0.0007 | < 0.0001 | Fusobacterium |
8.33 | − 21 | 3.12 | < 0.0008 | < 0.0001 | UBA1819, Family Ruminococcaceae | |
Mixed additions vs Glu |
57.99 | 23.33 | 2.92 | < 0.0011 | < 0.0001 | Pediococcus |
11.38 | 21.04 | 3.41 | < 0.0012 | < 0.0001 | Enterococcus | |
1809.38 | 2.7 | 0.7 | < 0.0013 | 0.008 | Lactobacillus | |
Mixed additions vs Gln |
37.65 | 24.02 | 2.21 | < 0.0009 | < 0.0001 | Fusobacterium |
59.71 | 9.67 | 2.53 | < 0.0010 | 0.013 | Pediococcus | |
Day 21 | ||||||
Family level | ||||||
100Glu vs CO | 10.809 | 18.989 | 2.53 | < 0.0001 | < 0.0001 | Fibrobacteraceae |
75Glu + 25Gln vs CO | 10.809 | 18.689 | 2.59 | < 0.0001 | < 0.0001 | Fibrobacteraceae |
50Glu + 50Gln vs CO | 10.809 | 20.141 | 2.52 | < 0.0001 | < 0.0001 | Fibrobacteraceae |
25Glu + 75Gln vs CO | 10.809 | 20.892 | 2.65 | < 0.0001 | < 0.0001 | Fibrobacteraceae |
100Gln vs CO | 10.809 | 19.677 | 2.58 | < 0.0001 | < 0.0001 | Fibrobacteraceae |
101.951 | 5.117 | 1.53 | 0.001 | 0.028 | Bacteroidales_RF16_group | |
109.322 | 2.14 | 0.68 | 0.002 | 0.037 | Peptococcaceae | |
Genus level | ||||||
100Glu vs CO | 18.045 | 21.269 | 5.08 | < 0.0001 | 0.006 | Selenomonas_3 |
25Glu + 75Gln vs CO | 18.045 | 22.13 | 5.35 | < 0.0001 | 0.007 | Selenomonas_3 |
CO vs AAs addition | 7.378 | − 21.523 | 4.13 | < 0.0001 | < 0.0001 | Succiniclasticum |
baseMean1 = mean of normalized taxa counts averaged over all samples from both conditions. log2FoldChange2 = log2 Fold Change. The sign is relative to the first group identified in the comparison. lfcSE3 = log2 Fold change standard error. P value4 = Wald statistic value. Padj5 = Benjamini–Hochberg adjusted p value.