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. 2022 Aug 12;9:958586. doi: 10.3389/fmolb.2022.958586

TABLE 1.

Statistics of X-ray diffraction data collection and model refinement.

PtGSTU19 PtGSTU20
Flavonols Flavones Flavanones
Apo GSH Apo GSH GS-PAP Galangin Morin Baicalein Pinocembrin
U19 APO U19 GSH U20 APO U20 GSH U20 GS-PAP U20 GAL U20 MOR U20 BAI U20 PIN
Data collection
 Diffraction source SOLEIL-Px1 SOLEIL-Px2 SOLEIL-Px2 SOLEIL-Px2 SOLEIL-Px2 ESRF-ID30a3 SOLEIL-Px2 SOLEIL-Px1 ESRF-ID30a3
 Detector EIGER X 16M EIGER X 9M EIGER X 9M EIGER X 9M EIGER X 9M Eiger X 4M EIGER X 9M EIGER X 16M Eiger X 4M
 Wavelength (Å) 0.97857 0.98010 0.980106 0.98011 0.98012 0.967700 0.98012 0.97856 0.967700
 Space group P41212 P41212 P41212 P41212 P41212 P41212 P41212 P41212 P41212
 Unit-cell a; c (Å) 56.8; 182.3 56.7; 182.0 56.0; 183.2 56.6; 181.6 56.6; 181.8 56.6; 181.0 56.6; 183.0 56.1; 181.6 56.3; 182.6
 Resolution range (Å) 41.5–1.6 (1.63–1.60) 48.1–1.6 (1.64–1.61) 47.8–2.0 (2.06–2.01) 48.0–1.6 (1.67–1.64) 45.5–1.6 (1.67–1.62) 41.3–1.8 (1.88–1.84) 48.1–1.7 (1.73–1.69) 47.7–2.1 (2.05–2.10) 50.0–1.6 (1.69–1.60)
 Tot. no. of meas. int 719,996 (26,911) 381,726 (19,190) 517,173 (34,020) 945,416 (39,869) 976,401 (64,399) 691,036 (41,072) 879,097 (57,188) 493,731 (34,941) 1,068,173 (152,671)
 Unique reflections 40,239 (1870) 39,646 (1927) 20,354 (1413) 36,971 (1740) 38,378 (2678) 26,724 (1560) 34,640 (2397) 19,240 (1370) 40,026 (5669)
 Average redundancy 18 (14) 10 (10) 25 (25) 26 (23) 25 (24) 26 (26) 25 (24) 26 (26) 27 (28)
 Mean I/σ(I) 22.5 (2.1) 17.7 (2.3) 31.8 (2.2) 33.3 (2.4) 28.6 (2.1) 19.4 (3.3) 34.5 (2.2) 35.2 (4.0) 28.5 (3.0)
 Completeness (%) 99.7 (95.2) 99.9 (100) 99.7 (96.1) 99.8 (96.1) 99.7 (95.5) 99.8 (97.5) 99.7 (95.9) 99.9 (98.2) 100.0 (100.0)
R merge 0.068 (1.40) 0.062 (0.67) 0.057 (1.674) 0.055 (1.44) 0.064 (1.308) 0.102 (1.101) 0.049 (1.380) 0.053 (0.80) 0.062 (1.118)
R meas 0.070 (1.46) 0.066 (0.70) 0.058 (1.709) 0.056 (1.47) 0.066 (1.339) 0.104 (1.122) 0.051 (1.410) 0.054 (0.81) 0.063 (1.139)
 CC1/2 1.00 (0.80) 1.00 (0.94) 1.00 (0.89) 1.00 (0.83) 1.00 (0.78) 1.00 (0.85) 1.00 (0.80) 1.00 (0.96) 1.00 (0.89)
 Wilson B-factor (Å2) 30.8 26.7 49.4 30.2 31.5 33.2 36.0 44.9 28.5
Refinement
Resolution range (Å) 16.1 1.6 48.1 1.6 20.7 2.0 22.7 1.6 45.4 1.6 21.7 1.8 22.9 1.7 47.7 2.1 16.0 1.6
No. of reflections 40,092 35,549 20,247 36,853 38,281 26,615 34,524 19,138 39,871
R work/R free 0.227/0.235 0.229/0.250 0.228/0.253 0.204/0.235 0.210/0.232 0.215/0.231 0.215/0.231 0.226/0.256 0.214/0.231
Corr Fo–Fc/Fo–Fcfree 0.949/0.951 0.948/0.942 0.939/0.938 0.952/0.939 0.953/0.954 0.944/0.940 0.951/0.950 0.937/0.914 0.951/0.945
Total number of atoms 2117 2070 1720 2091 2092 1942 1981 1801 2023
Average B-factor (Å2) 35.7 32.1 56.0 34.3 33.7 42.0 40.0 51.0 33.0
Model quality
RMSZ bond lengths 0.43 0.43 0.42 0.42 0.42 0.42 0.42 0.42 0.42
RMSZ bond angles 0.53 0.53 0.55 0.56 0.54 0.50 0.53 0.52 0.54
Ramachandran fav. (%) 97 98 96 96 96 97 96 96 97
Ramachandran all. (%) 3 2 4 4 4 3 4 3 3
Rotamer outliers (%) 0 0 0 0 0 0 1 1 1
Clashscore 1 2 2 1 2 1 1 1 1
PDB entry 7ZS3 7ZVP 7ZZN 8A08 8A0I 8A0O 8A0P 8A0Q 8A0R

R merge = hkli|Ii(hkl) I(hkl)|/hkliIi(hkl) . R meas = hkl{N(hkl)/[N(hkl)1]}1/2 i|Ii(hkl)I(hkl)|/hkliIi(hkl) . CC1/2 is the correlation coefficient of the mean intensities between two random half-sets of data. R work = hkl||Fobs||Fcalc||/hkl|Fobs| ; 5% of the reflections were selected for R free calculation. RMSZ: root mean square Z-score. The MolProbity clashscore is the number of serious clashes per 1000 atoms. Values in parentheses are for the highest resolution shell.