Table 2.
List of gene fusions involving targetable genes in Chinese patients with gastric cancer and drugs under clinical trial or approved by the Food and Drug Administration
|
Patients ID
|
Fusion gene
|
5' partner gene
|
3' partner gene
|
Variant frequency, %
|
Functional domain is included or not
|
Targeted drugs
|
||||||
|
Gene name
|
Chromosome
|
Last observed exon
|
Breakpoint
|
Gene name
|
Chromosome
|
First observed exon
|
Breakpoint
|
|||||
| Patient 01 | RARA-PGAP3 | RARA | 17 | 3 | 38504951 | PGAP3 | 17 | 8 | 37828020 | 24.1 | Partially include | Tamibarotene targeting RARA fusion2 |
| Patient 01 | KRTAP9-7-RARA | KRTAP9-7 | 17 | downstream | 39437039 | RARA | 17 | 3 | 38499547 | 56.9 | Completely include | Tamibarotene targeting RARA fusion2 |
| Patient 02 | RARA-KRT13 | RARA | 17 | 2 | 38491648 | KRT13 | 17 | 8 | 39657269 | 29.2 | Partially include | Tamibarotene targeting RARA fusion2 |
| Patient 02 | RARA-ETV4 | RARA | 17 | 2 | 38499726 | ETV4 | 17 | 5 | 41621243 | 76 | Partially include | Tamibarotene targeting RARA fusion2 |
| Patient 03 | RARA-IKZF3 | RARA | 17 | 2 | 38504120 | IKZF3 | 17 | 2 | 38009555 | 18.4 | Partially include | Tamibarotene targeting RARA fusion2 |
| Patient 04 | FGFR2-PDE2A | FGFR2 | 10 | 17 | 123241248 | PDE2A | 11 | 7 | 72307251 | 1.4 | Completely include | Pemigatinib; Erdafitinib targeting FGFR fusion1 |
| Patient 05 | FGFR2-intergenic | FGFR2 | 10 | 17 | 123242196 | intergenic | 10 | - | 123394107 | 16.6 | Completely include | Pemigatinib; Erdafitinib targeting FGFR fusion1 |
| Patient 06 | FGFR2-intergenic | FGFR2 | 10 | 17 | 123240841 | intergenic | 10 | - | 122793842 | 4.2 | Completely include | Pemigatinib; Erdafitinib targeting FGFR fusion1 |
| Patient 07 | FGFR2-SHTN1 | FGFR2 | 10 | 17 | 123242528 | SHTN1 | 10 | 6 | 118709305 | 5.1 | Completely include | Pemigatinib; Erdafitinib targeting FGFR fusion1 |
| Patient 08 | FGFR3-PHTF2 | FGFR3 | 4 | 18 | 1808927 | PHTF2 | 7 | 11 | 77567982 | 3.3 | Completely include | Pemigatinib; Erdafitinib targeting FGFR fusion1 |
| Patient 09 | STIM2-BRAF | STIM2 | 4 | 11 | 27012641 | BRAF | 7 | 9 | 140487929 | 12.7 | Completely include | Selumetinib targeting BRAF fusion1 |
| Patient 09 | STIM2-BRAF | STIM2 | 4 | 11 | 27013243 | BRAF | 7 | 10 | 140486103 | 1.1 | Completely include | Selumetinib targeting BRAF fusion1 |
| Patient 09 | TBC1D19-BRAF | TBC1D19 | 4 | 4 | 26629603 | BRAF | 7 | 10 | 140486782 | 6.5 | Completely include | Selumetinib targeting BRAF fusion1 |
| Patient 10 | TES-MET | TES | 7 | 1 | 115867013 | MET | 7 | 2 | 116332227 | 0.7 | Completely include | Crizotinib targeting MET fusion1 |
| Patient 11 | MET-TES | MET | 7 | 21 | 116436166 | TES | 7 | 4 | 115889445 | 24.6 | Not include | Crizotinib targeting MET fusion1 |
| Patient 12 | EML4-ALK | EML4 | 2 | 6 | 29447382 | ALK | 2 | 20 | 42498662 | 3.5 | Completely include | Crizotinib; ceritinib targeting ALK fusion1 |
| Patient 13 | OPALIN-RET | OPALIN | 10 | 6 | 98104545 | RET | 10 | 11 | 43610099 | 5.46 | Completely include | Pralsetinib targeting RET fusion1 |
| Patient 14 | ARHGAP10-NTRK2 | ARHGAP10 | 4 | 1 | 148716754 | NTRK2 | 9 | 16 | 87476645 | 15.3 | Completely include | Larotrectinib targeting NTRK2 fusion1 |
| Patient 15 | NRG1-FDFT1 | NRG1 | 8 | 12 | 32617907 | FDFT1 | 8 | 8 | 11685375 | 8.9 | Partially include | MCLA-128 targeting NRG1 fusion2 |
| Patient 16 | EGFR-SEPTIN14 | EGFR | 7 | 25 | 55269173 | SEPTIN14 | 7 | 10 | 55871179 | 9.6 | Completely include | Afatinib targeting EGFR fusion2 |
FDA-approved drugs targeting gene fusions.
Drugs targeting gene fusions are under clinical trials.