Table 1.
Type | Tetrad | Cation | PDB | |
---|---|---|---|---|
Homo | N1-H(N6) A | - | 1EVM [13], 1NP9 [28] | |
N3-H(N6) A | Na+ | 6A85 [14], 1MDG [26] | ||
N7-H(N6) A | -/Na+ | 1EVN [13], 1J6S [19] | ||
C4 | -/Ba2+/Na+ | 1EVO [9], 4U92 [10], 6A85 [14] | ||
T4 | -/Na+/K+ | 1EMQ [11], 6A85 [14], 4L0A [23], 1S47 [24] | ||
U4 | - | 1RAU [15], 6GE1 [18], 1J6S [19], 1MDG [26], 1J8G [54], 2AWE [55], 4RKV [56], 4RJ1 [56], 4RNE [56], 4XK0 [57] |
||
I4 | K+ | 2GRB [21] | ||
Base-paired | Major groove |
Direct G:C:G:C | -/Na+ | 1XCE [29], 1A8N [30], 1A6H [31], 3R1E [34], 1JVC [35], 1NYD [58], 6SYK [59], 6SX6 [59] |
Slipped G:C:G:C | K+ | 1A8W [32], 7CV4 [33] | ||
Direct A:T:A:T | -/K+ | 1K8P [1] | ||
Slipped A:T:A:T | -/Na+ | 1XCE [29], 1JVC [35] | ||
Direct G:T:G:T | - | [36,37] | ||
Direct G:A:G:A | - | 5M1L, 5M2L [39] | ||
Minor groove | Direct G:C:G:C | - | 184D [41], 1MF5 [42], 1EU2 [43], 4ZKK [60], 5FHJ [61] | |
Slipped G:C:G:C | -/divalent | 6MC2, 6MC3, 6MC4, 6N4G [50], 2HK4 [45] | ||
Slipped C:G:G:C | - | 2K8Z, 2K90, 2K97 [45] | ||
Direct G:T:G:T | - | -[48] | ||
Slipped G:T:G:T | - | 1C11 [62], 2LSX [63], 7O5E [64] | ||
Slipped G:C:G:T | - | 5OGA [65] | ||
Direct A:T:A:T | Na+ | 1EU6 [43], 284D [46] | ||
Direct G:C:A:T | Na+ | 1N96 [47] | ||
Slipped G:A:G:A | divalent | 6MC2, 6MC3, 6MC4, 6N4G [50] |