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. 2022 Aug 19;27(16):5287. doi: 10.3390/molecules27165287

Table 1.

Structures with the different non-G tetrads mentioned in the text with their corresponding references and their PDB codes, when available.

Type Tetrad Cation PDB
Homo N1-H(N6) A - 1EVM [13], 1NP9 [28]
N3-H(N6) A Na+ 6A85 [14], 1MDG [26]
N7-H(N6) A -/Na+ 1EVN [13], 1J6S [19]
C4 -/Ba2+/Na+ 1EVO [9], 4U92 [10], 6A85 [14]
T4 -/Na+/K+ 1EMQ [11], 6A85 [14], 4L0A [23], 1S47 [24]
U4 - 1RAU [15], 6GE1 [18], 1J6S [19], 1MDG [26], 1J8G [54],
2AWE [55], 4RKV [56], 4RJ1 [56], 4RNE [56], 4XK0 [57]
I4 K+ 2GRB [21]
Base-paired Major
groove
Direct G:C:G:C -/Na+ 1XCE [29], 1A8N [30], 1A6H [31], 3R1E [34],
1JVC [35], 1NYD [58], 6SYK [59], 6SX6 [59]
Slipped G:C:G:C K+ 1A8W [32], 7CV4 [33]
Direct A:T:A:T -/K+ 1K8P [1]
Slipped A:T:A:T -/Na+ 1XCE [29], 1JVC [35]
Direct G:T:G:T - [36,37]
Direct G:A:G:A - 5M1L, 5M2L [39]
Minor groove Direct G:C:G:C - 184D [41], 1MF5 [42], 1EU2 [43], 4ZKK [60], 5FHJ [61]
Slipped G:C:G:C -/divalent 6MC2, 6MC3, 6MC4, 6N4G [50], 2HK4 [45]
Slipped C:G:G:C - 2K8Z, 2K90, 2K97 [45]
Direct G:T:G:T - -[48]
Slipped G:T:G:T - 1C11 [62], 2LSX [63], 7O5E [64]
Slipped G:C:G:T - 5OGA [65]
Direct A:T:A:T Na+ 1EU6 [43], 284D [46]
Direct G:C:A:T Na+ 1N96 [47]
Slipped G:A:G:A divalent 6MC2, 6MC3, 6MC4, 6N4G [50]