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. 2022 Aug 26;17(8):e0273013. doi: 10.1371/journal.pone.0273013

Fig 3. cgMLSA maximum likelihood phylogeny.

Fig 3

The cgMLSA phylogeny tree based in 2.643 genes, containing 2,531,373 positions rooted by midpoint is represented. The colour strip represents the C. difficile Clades, where Clade 1, 2, 3 and 5 are represented by respectively the colours cyan, red, purple and green. The values in the branches correspond to the percentage of support (0 to 100%) based on 1000 ultrafast bootstrap replicates. The figure represents that RT883, 884, and 885 are very similar to each other and are related to other clade 2 reference strains (R20291, CD196, BI1, 2007855). Reference strains from clade 1 (CD630), clade 3 (M68, CF5), and clade 5 (M120) were also added for comparison purpose.