Skip to main content
. 2022 Aug 4;25(9):104873. doi: 10.1016/j.isci.2022.104873

Figure 5.

Figure 5

Density, genomic abundance and divergency of TEs in 26 beetles

(A) Correlation between TE diversity (the numbers of the annotated TE families) and the assembled GS of 26 beetles in the order Coleoptera. Pearson correlation coefficients are noted near the regression lines with pvalues (∗∗∗＜0.001; 0.001≤∗∗＜0.01; 0.01≤∗＜0.05). See also Table S8B.

(B) Time-calibrated phylogeny of 26 beetles with total TEs coverage mapped on the multi-colored branches. Heatmap on the right represents genome coverage of the top five TEs among all TE types. See also Table S9A.

(C) Kimura substitution level % (TE divergency based on the Kimura distance of TE copies to the corresponding consensus sequences) of several primary TE families which contribute most to variation in GS in four investigated Coleoptera families separately. Coccinellidae: C. sep, Coccinella septempunctata; C. mon, Cryptolaemus montrouzieri; H. axy, Harmonia axyridis; P. jap, Propylea japonica; Chrysomelidae: C. mac, Callosobruchus maculatus; D. vir, Diabrotica virgifera; L. dec, Leptinotarsa decemlineata; O. com, Ophraella communa; Lampyridae: A. ter, Abscondita terminalis; A. lat, Aquatica lateralis; L. yun, Lamprigera yunnana; P. pyr, Photinus pyralis; P. pec, Pyrocoelia pectoralis; Curculionidae: D. pon, Dendroctonus ponderosae; H. ham, Hypothenemus hampei; R. fer, Rhynchophorus ferrugineus; S. ory, Sitophilus oryzae.