Figure 1.

Generation of multi-omics datasets of mice lungs after immunization, see also Figure S1

(A) Overview of study design. scRNA-seq data work as a bridge to link scATAC-seq and spatial transcriptomics data. UMAP plots were shown as examples, not for interpretation.

(B) UMAP plot of 12 lung cell types identified in scRNA-seq data, with manual annotation according to canonical markers.

(C) Dot plot showing selected canonical markers for each celltype.

(D) Heatmap showing top three (by log2-Fold Change) markers for each celltype.