Fig. 1.
Methodology used in our study for SARS-CoV-2 whole genome sequencing and analysis. (A) Graphical representation of the sequencing workflow from nasopharyngeal RNA extraction to library preparation, followed by sequencing on different platforms– ONT and Illumina. (B) A workflow for sequencing analysis on both ONT and Illumina platform, highlighting the data quality control, read annotation and mutation calling.