TABLE 1.
The upregulated differentially expressed genes with genetic variations in LW duck shown to have functions involved in amino acid metabolic and lipid-related functions (p < 0.05).
| ID | log2FoldChange | p-value | High and moderate effect variants a | Low and modifier effect variants b | Related functions c |
|---|---|---|---|---|---|
| ARRDC3 | 1.21 | 0.05 | 0 | 45 | Fat pad development (GO: 0060613) |
| CASTOR2 | 1.59 | 0.03 | 0 | 216 | Cellular response to amino acid starvation (GO:0034198) |
| CTH | 1.01 | 0.04 | 0 | 1 | lipid metabolic process (GO: 0006629), cysteine metabolic process (GO: 0006534) |
| GLUL | 1.12 | 0.02 | 1 | 10 | glutamine family amino acid metabolic process (GO: 0009064), glutamine catabolic process (GO: 0006542) |
| PLA2G6 | 2.01 | 0.02 | 0 | 13 | Lipid metabolic process (GO:0006629), Linoleic acid metabolism (GO: 0032049) |
| PLIN2 | 1.6 | 0.02 | 1 | 20 | Lipid storage (GO: 0019915) |
| SGPL1 | 0.8 | 0.02 | 1 | 96 | Fatty acid metabolic process (GO: 0006631) |
| SIRT7 | 0.6 | 0.04 | 0 | 4 | peptidyl-lysine deglutarylation (GO: 0061699) |
| SLC7A6 | 0.78 | 0.01 | 1 | 1 | Ornithine transport, amino acid transport (GO: 0003333) |
a
The number of high and moderate effect variants.
b
The number of low and modifier effect variants.
c
Related Functions: The genes functions were obtained using DAVID Functional Annotation Tools (http://david.abcc.ncifcrf.gov/).