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. 2021 Jun 9;45(3):504–511. doi: 10.1016/j.bj.2021.06.001

Table 1.

Common human pathogen targets and primer sequences.

Pathogens Genes Enzymes Primer sequences PCR product References
Enterobacteriaceae (K. pneumoniaeE. coliSalmonella) blaCMY AmpC β-lactamase 5′-CTGCTGCTGACAGCCTCTTT-3′ 1109 bp [25]
5′-TTTTCAAGAATGCGCCAGGC-3′
blaDHA AmpC β-lactamase 5′-CGTCTGACCATAATCCACCTGT-3′ 1300 bp [26]
5′-CCAGTGCACTCAAAATAGCCT-3′
blaCTX-M-3 ESBL 5′-CCAGAATAAGGAATCCCAT-3′ 911 bp [27]
5′-CCCATTCCGTTTCCGCTA-3′
blaCTX-M-14 ESBL 5′-AACACGGATTGACCGTCTTG-3′ 906 bp [28]
5′-TTACAGCCCTTCGGCGAT-3′
blaSHV ESBL 5′-GGGTTATTCTTATTTGTCGC-3′ 928 bp [29]
5′-TTAGCGTTGCCAGTGCTC-3′
mcr-1 phosphoethanolamine transferases 5ʹ-CGGTCAGTCCGTTTGTTC-3ʹ 308 bp [30]
5ʹ-CTTGGTCGGTCTGTAGGG-3ʹ
blaNDM Class B metallo-β-lactamase 5′-ACGGTTTGGCGATCTGGTTT-3′ 663 bp GenBank: FN396876.1
5′-ATGCGGGCCGTATGAGTGATT-3′
blaKPC Class A metallo-β-lactamase 5′-CGCCGTCTAGTTCTGCTGTCTTGT-3′ 879 bp GenBank: AF297554.1
5′-TTCAGAGCCTTACTGCCCGTTGAC-3′
P. aeruginosa blaVIM Class B metallo-β-lactamase 5′-GATGGTGTTTGGTYGCATA-3′ 390 bp GenBank: Y18050.2
5′-CGAATGCGCAGCACCRG-3′
algD GDP mannose dehydrogenase gene 5′-TTCCCTCGCAGAGAAAACATC-3′ 520 bp [31]
5′-CCTGGTTGATCAGGTCGATCT-3′
exoT Exotoxin T 5′-AATCGCCGTCCAACTGCATGCG-3′ 152 bp [32]
5′-TGTTCGCCGAGGTACTGCTC-3′