Table 1.
Common human pathogen targets and primer sequences.
Pathogens | Genes | Enzymes | Primer sequences | PCR product | References |
---|---|---|---|---|---|
Enterobacteriaceae (K. pneumoniae/E. coli/Salmonella) | blaCMY | AmpC β-lactamase | 5′-CTGCTGCTGACAGCCTCTTT-3′ | 1109 bp | [25] |
5′-TTTTCAAGAATGCGCCAGGC-3′ | |||||
blaDHA | AmpC β-lactamase | 5′-CGTCTGACCATAATCCACCTGT-3′ | 1300 bp | [26] | |
5′-CCAGTGCACTCAAAATAGCCT-3′ | |||||
blaCTX-M-3 | ESBL | 5′-CCAGAATAAGGAATCCCAT-3′ | 911 bp | [27] | |
5′-CCCATTCCGTTTCCGCTA-3′ | |||||
blaCTX-M-14 | ESBL | 5′-AACACGGATTGACCGTCTTG-3′ | 906 bp | [28] | |
5′-TTACAGCCCTTCGGCGAT-3′ | |||||
blaSHV | ESBL | 5′-GGGTTATTCTTATTTGTCGC-3′ | 928 bp | [29] | |
5′-TTAGCGTTGCCAGTGCTC-3′ | |||||
mcr-1 | phosphoethanolamine transferases | 5ʹ-CGGTCAGTCCGTTTGTTC-3ʹ | 308 bp | [30] | |
5ʹ-CTTGGTCGGTCTGTAGGG-3ʹ | |||||
blaNDM | Class B metallo-β-lactamase | 5′-ACGGTTTGGCGATCTGGTTT-3′ | 663 bp | GenBank: FN396876.1 | |
5′-ATGCGGGCCGTATGAGTGATT-3′ | |||||
blaKPC | Class A metallo-β-lactamase | 5′-CGCCGTCTAGTTCTGCTGTCTTGT-3′ | 879 bp | GenBank: AF297554.1 | |
5′-TTCAGAGCCTTACTGCCCGTTGAC-3′ | |||||
P. aeruginosa | blaVIM | Class B metallo-β-lactamase | 5′-GATGGTGTTTGGTYGCATA-3′ | 390 bp | GenBank: Y18050.2 |
5′-CGAATGCGCAGCACCRG-3′ | |||||
algD | GDP mannose dehydrogenase gene | 5′-TTCCCTCGCAGAGAAAACATC-3′ | 520 bp | [31] | |
5′-CCTGGTTGATCAGGTCGATCT-3′ | |||||
exoT | Exotoxin T | 5′-AATCGCCGTCCAACTGCATGCG-3′ | 152 bp | [32] | |
5′-TGTTCGCCGAGGTACTGCTC-3′ |