TABLE 1.

List of sORFs

Ribo-seq-identified sORF	Coordinates	Upstream flanking gene	Downstream flanking gene	Strand	Expression (highest peak)	Start codon	Nucleotide sequence	Peptide sequence	Small protein length (amino acids)	Theoretic mol wt (kDa)a	Presence of secretion signalb	Found within/overlapping sRNAc
rio1	24644–24742	spv_0025	spv_0027	+	48	CTG	CTGCGTGAAGCGGGTCAGGGGAGGAATCCAGCAGCCCTAAGCGATTTGAATTGTGTGCTCTTTTTTTCGTGCTTTTTCCGAATAAATAAGATAGAATAA	MREAGQGRNPAALSDLNCVLFFSCFFRINKIE	32	3.6	No	scRNA
rio2	29719–29778	spv_0033	spv_0034	+	6.25	ATG	ATGACTGTACGTCATCAGAAGTTTCAGCGACCATCATTTTTGAACAGTGATAGCACTTGA	MTVRHQKFQRPSFLNSDST	19	2.2	No	srf-01
rio3	39961–39996	spv_0047	spv_2085	+	53	ATG	ATGAATCGTAATTTAGAACGGTGTTATCTATTCTGA	MNRNLERCYLF	11	1.4	No	srf-02
rio4	39885–39971	spv_0047	spv_2084	+	24.4	ATG	ATGATGAATCTGAATCAAAATTATTTTGCGCATGTAAAGAGGAGTCTTATAGTAACGAGTCAAAAAAGGAGTAACTATGAATCGTAA	MMNLNQNYFAHVKRSLIVTSQKRSNYES	28	3.3	Yes
rio5	78879–78992	spv_0077	spv_2092	+	2.7	ATG	ATGAAAATCAAAGATCAAACTAGGAAACTAGCTACGGGCTGCTCAAAACACTGTTTTGAGGTTGCAGATAGAACTGACGAAGTCAGTAACATCTATACGGCAAGGCGACGTTGA	MKIKDQTRKLATGCSKHCFEVADRTDEVSNIYTARRR	37	4.3	No	spd sr8
rio6	86107–86193	spv_0082	spv_0083	+	10	ATG	ATGAAGCTCGTCAACAGGTGTCTTATGACAAGTAACCTTGGCTGTTTAGGCGAAGGGCATCTGCACGAATCAGGGCTTTCTAAGTGA	MKLVNRCLMTSNLGCLGEGHLHESGLSK	28	3	No
rio7	113831–113908	spv_0112	spv_0113	+	13	TTG	TTGTTAAAGGAGGCTCAGTCCTTGGGCAAAAATCTGCTGTACTACAATGCTTGGAAAGATATCAAGAACAAAGAATGA	MLKEAQSLGKNLLYYNAWKDIKNKE	25	2.9	No
rio8	113958–113987	spv_0112	spv_0113	+	5.4	TTG	TTGGGTGACATCAAAGAAAAGTTAGATTAA	MGDIKEKLD	9	1	No
rio9	113770–113814	spv_0112	spv_0113	+	4.2	TTG	TTGATTAGTCTGGCTATAATCTTTCCATGGGGCTGGCCGATATAA	MISLAIIFPWGWPI	14	1.6	No
rio10	118625–118672	spv_0116	spv_2099	+	3.8	ATG	ATGTGTAGGAATAGCCCCTTTTTTTCACGTATATATAATAGGTTCTGA	MCRNSPFFSRIYNRF	15	1.9	No
rio11	118721–118750	spv_0116	spv_2099	+	2.5	TTG	TTGTATTTTAACTATTGCTCGAATTTATAG	MYFNYCSNL	9	1.1	No
rio12	119733–119777	spv_0116	spv_2099	+	40	TTG	TTGATTAGTCTAGCTATAATCTTTCCATGGGGCTGGTCGATATAA	MISLAIIFPWGWSI	14	1.6	No
rio13	122716–122766	spv_0119	spv_0120	+	15	ATG	ATGGCTGATGAATCTTATTTATACTGTTGCAGTAGGCATTGTCTAGGATAA	MADESYLYCCSRHCLG	16	1.8	No
rio14	122780–122845	spv_0119	spv_0120	+	8	ATG	ATGGGGGAAATTGGAATAATTTTAGTAGAAACATTAAAGGATTATGGACAAGTAGCGCAGGATTAG	MGEIGIILVETLKDYGQVAQD	21	2.2	No
rio15	127035–127055	spv_0124	spv_2103	+	57.5	ATG	ATGGGGATTGTATTACTCTGA	MGIVLL	7	0.64	No
rio16	132259–132294	spv_0127	spv_0128	+	25	ATG	ATGTTGCAGGCTTTTTTGTCCTGCACTTCTTTGTAG	MLQAFLSCTSL	11	1.2	No	srf-04
rio17	149686–149748	spv_0143	spv_0144	−	2.1	ATG	ATGAGGTGTGAGCTCAAAATATCCTCCAGTTATGTTTTTCCTAATAGTATACCGGAAGAGTGA	MRCELKISSSYVFPNSIPEE	20	2.3	No	srf-05
rio18	165545–165586	spv_0160	spv_0161	+	12.5	TTG	TTGAAGTTGTTCAACTGTTTTTTGAGTATAAACAGTCTTTAA	MKLFNCFLSINSL	13	1.5	No
rio19	174277–174363	spv_0169	spv_0170	−	2.2	ATG	ATGAAAGAAGATAAAAGTATATTTGTGCTTTTTGCGTGCTCTGAAATGATTACTTGTCATTTCAGAGCATTTTTGTTAATCGCATAA	MKEDKSIFVLFACSEMITCHFRAFLLIA	28	3.2	No
rio20	186024–186104	spv_0182	spv_0183	+	105	CTG	CTGGGAGACTGTATCAGCCCAACTCCCAGAAATGGGGAAGGGTTGGAACGTCCAGTGGATGTTTTTAGCCTAGCTCTTTGA	MGDCISPTPRNGEGLERPVDVFSLAL	26	2.7	No
rio21	186133–186174	spv_0182	spv_0183	+	33	ATG	ATGTTTTACTCCACGTTAATATTCATAGTTGCTAGTGATTAG	MFYSTLIFIVASD	13	1.5	No
rio22	185918–185992	spv_0182	spv_0183	+	12.5	CTG	CTGGTAAGTCCAGTGGACGTTTTTAGCCTGACGCTAAAAATAAAAACCGTCAGTAAGTTCGGGGGACGTTTTTAG	MVSPVDVFSLTLKIKTVSKFGGRF	24	2.6	No
rio23	188045–188092	spv_0184	spv_0185	+	5.75	ATG	ATGCAAGTAGAAAGGGCTGGATTTTTCAGCCTTTTTACTTTTACCTAG	MQVERAGFFSLFTFT	15	1.7	No
rio24	195914–195985	spv_0191	spv_0192	+	5.5	TTG	TTGCGACACGCTCGGTTGCATTGCCACGCAACACCGCGTCGGTTTTCTTGTGGAGCTAGCCTATTATCTTAA	MRHARLHCHATPRRFSCGASLLS	23	2.6	Yes
rio25	195901–195972	spv_0191	spv_0192	+	20	TTG	TTGATGCAAGAGGTTGCGACACGCTCGGTTGCATTGCCACGCAACACCGCGTCGGTTTTCTTGTGGAGCTAG	MMQEVATRSVALPRNTASVFLWS	23	2.5	No
rio26	202954–203037	spv_0206	spv_0207	+	40	TTG	TTGACGAAGAAACTAAAGTTTCTAGGAAAGTTTATCTTTTTCACACAGAGTTTAGCCCGGGTTCAATTGGGCTTGCCAATTTGA	MTKKLKFLGKFIFFTQSLARVQLGLPI	27	3.1	Yes
rio27	203084–203146	spv_0206	spv_0207	+	8.8	TTG	TTGCTTCTGCATTCAATTGTCTATTTTTGCTCGTGCTGTTACGCTCTTTGTATCATGTATTAA	MLLHSIVYFCSCCYALCIMY	20	2.3	No
rio28	249098–249157	spv_0252	spv_0253	+	1.68	ATG	ATGAATACAAGGAGTTTTATCTTTTTCGCGCAGCATCCCGTTCCAGCTCATATCGGCTAA	MNTRSFIFFAQHPVPAHIG	19	2.1	No
rio29	272815–272874	spv_0273	spv_0274	+	11.3	TTG	TTGAAAGGCCCCGGAACCTTCCAAATACTTTTCGATGGGAAGGAACACCCATCACCGTAA	MKGPGTFQILFDGKEHPSP	19	2	No
rio30	306391–306480	spv_0307	spv_0308	+	18	ATG	ATGTTTCATCTAGAAATCTTCAGAAGTAAAGATAGTCTACTCCTGCTTGAAAAAGAAAAACCGGAAATAGTACATAGAGTAGCGATTTAG	MFHLEIFRSKDSLLLLEKEKPEIVHRVAI	29	3.4	No
rio31	400274–400312	spv_0398	spv_0399	+	28	ATG	ATGGTAAAATCCAATGTAAAAATCATTCTCAGCTATTGA	MVKSNVKIILSY	13	1.3	No
rio32	402069–402098	spv_0399	spv_0400	+	11.9	ATG	ATGGTTTTACGAACGAATAGGCGAAAATAA	MVLRTNRRK	9	1.1	No
rio33	401926–401958	spv_0399	spv_0400	+	11	TTG	TTGTTGGACGCTAGTCGCTATTTGGCGAACTAG	MLDASRYLAN	10	1.1	No
rio34	408631–408684	spv_0406	spv_2159	+	18	ATG	ATGAAAAAGATTATGAGAAAAATTGCATCGTTATTATTGGTTCTAGTTGTATAA	MKKIMRKIASLLLVLVV	17	1.9	Yes
rio35	411179–411250	spv_0409	spv_0410	+	6.1	ATG	ATGAATTTGAAGGACATAAGGAATACCTATCTCTCAGATGATTTATTGAGGAAGAAAGATAGGAGTTTTTGA	MNLKDIRNTYLSDDLLRKKDRSF	23	2.8	No
rio36	444912–444977	spv_0441	spv_0442	+	12.5	CTG	CTGGTGCAGTCGTCCCAGATTATTCTTATTAGTAGGGTCTTGTTTTCTATATCCCCTCGTAGTTAA	MVQSSQIILISRVLFSISPRS	21	2.3	No
rio37	485231–485263	spv_0474	spv_0475	+	3.5	TTG	TTGGAAAGGCTAGAACTAAAGAATGACGTGTAG	MERLELKNDV	10	1.2	No
rio38	497485–497523	spv_0490	spv_0491	+	10	ATG	ATGCGGGCTTGGCCCGAAATTGGGTGGTACCGCGGATAA	MRAWPEIGWYRG	12	1.5	No
rio39	508756–508830	spv_0500	spv_0501	+	30	ATG	ATGTTATCACTAATACAAGTGAGCAGGAACCTATTTAATCACATCAGAAGAAGTTTCTTGATGTTTTTTAAGTAG	MLSLIQVSRNLFNHIRRSFLMFFK	24	2.9	No	srf-10
rio40	565754–565780	spv_0553	spv_2193	+	17	ATG	ATGTATAGTAGACTGAATCTAAAATAG	MYSRLNLK	8	1	No
rio41	569211–569276	spv_0556	spv_0557	+	24	ATG	ATGATGTTTGTAATTGAAGAAGTCAAGGATGAAAATCAAAAAAGGCAGTTGTCGCTGAGGTTTTGA	MMFVIEEVKDENQKRQLSLRF	21	2.6	No
rio42	569735–569764	spv_0557	spv_2196	+	9.4	TTG	TTGGTAGAGCAAGGCACTCGTAAAGCCTAG	MVEQGTRKA	9	1	No
rio43	616529–616573	spv_0590	spv_0510	+	4.4	ATG	ATGAAGCTATTGTTTTATAGTATAATTAATTTGTATAAAATTTAA	MKLLFYSIINLYKI	14	1.7	No
rio44	640777–640818	spv_0619	spv_0620	+	2.3	ATG	ATGGGAGTATCGCAAAAAATGACTCATCGTATTCAATTTTGA	MGVSQKMTHRIQF	13	1.5	No
rio45	653885–653935	spv_0632	spv_0633	−	11.8	ATG	ATGGAAGTGGAAATGATAATGGGGACTAGCAGTCTTCTATTGCCTTTCTAA	MEVEMIMGTSSLLLPF	16	1.7	No
rio46	657363–657389	spv_0635	spv_0636	+	275	TTG	TTGGAGAACGTTTCCAATTCTATGTAA	MENVSNSM	8	0.9	No
rio47	669265–669354	spv_0649	spv_0650	+	1.3	ATG	ATGACTTGGAAAAGTATTTCCAGTCACGAAAGGAGGTTGGGTTTTTGTTTCTGTCTAATGAAAGCAGAGCAAAAATTTGACCTTTTTTGA	MTWKSISSHERRLGFCFCLMKAEQKFDLF	29	3.5	No
rio48	676352–676426	spv_0657	spv_0658	+	182	ATG	ATGGACATTTCAGTAATTCGTCAGAAAATTGACGCAAATCGTGAAAAATTAGCTTATTTCAGGGGGTCTCTTTGA	MDISVIRQKIDANREKLAYFRGSL	24	2.8	No
rio49	684026–684079	spv_0663	spv_0664	+	750	ATG	ATGGTAGGTATTTATTACGAAGAGTTTTCCTATCAGTACTTTGTAACTCTATAA	MVGIYYEEFSYQYFVTL	17	2.1	No
rio50	738388–738480	spv_0722	spv_0723	+	1.4	CTG	CTGGAAAGAGATGAACAAATCAAATACATAAAAGATAAACTCATTTTTATTCGTTTGGTAAAAATAAAATGCATATTTTTAAAGAAAGATTGA	MERDEQIKYIKDKLIFIRLVKIKCIFLKKD	30	3.7	No
rio51	764625–764684	spv_0750	spv_0751	+	2	ATG	ATGGTATTGATCTTGATAAAATTTTTAAAATACTGTCATTTTGAATATAAAGGAGTTTGA	MVLILIKFLKYCHFEYKGV	19	2.3	No
rio52	767622–767705	spv_0756	spv_0757	+	20	TTG	TTGAAAGACGTGAATGATATGAACATGTCCTTGCTGGTGCTTAGGAAAAAAATTATAAGTATGTCAAGTTTAAGAAAAACTTGA	MKDVNDMNMSLLVLRKKIISMSSLRKT	27	3.1	Yes
rio53	773033–773068	spv_0761	spv_0762	+	57.5	TTG	TTGCTCTATTTCTGGGGAAATCAGACGTTTTTCTAG	MLYFWGNQTFF	11	1.4	No
rio54	863206–863247	spv_0846	spv_0847	+	9.6	CTG	CTGGCCCTACGGATGAAAAGTTTCGAAGAAACGCTATCATAA	MALRMKSFEETLS	13	1.5	No
rio55	865083–865118	spv_0850	spv_0851	+	14	TTG	TTGTGTTGTACGATTTTAACTGAGGCCTTGCACTAG	MCCTILTEALH	11	1.2	No
rio56	1051996–1052016	spv_0898	spv_0900	−	200	TTG	TTGAGCATAAGGAGGTCATAA	LSIRRS	6	0.7	No	srf-17
rio57	1036860–1036916	spv_0915	spv_2289	−	9.9	CTG	CTGTATCTATTGACAATGATAATTATTATCGATACAATAGACTTGAAATATGTTTAA	MYLLTMIIIIDTIDLKYV	18	2.1	No
rio58	962247–962309	spv_0992	spv_0991	−	14.35	TTG	TTGAACCTTTTATCCCGAACCTTGAAATGTAAAGGTGAGGAAGCTAGAAACAGCTTAAAATAA	MNLLSRTLKCKGEEARNSLK	20	2.2	No
rio59	958487–958513	spv_0997	spv_0996	−	6.7	TTG	TTGGAAGAAATAGCGTTTTTAACTTGA	MEEIAFLT	8	0.95	No
rio60	921151–921201	spv_1017	spv_1018	−	13.8	ATG	ATGAAGAACAAACCAAGATTCAAGCAGGAATTCCTACTGATAATGAAGTAA	MKNKPRFKQEFLLIMK	16	2	No
rio61	917345–917374	spv_1021	spv_1023	−	25.5	ATG	ATGAAAAAGAAAACAATAGCAATTATATAG	MKKKTIAII	9	1	No
rio62	1085315–1085347	spv_1059	spv_1060	−	1.6	ATG	ATGCCTTTCCTTGTTCACAGGAAATTTATATAA	MPFLVHRKFI	10	1.2	No
rio63	1153159–1153251	spv_1121	spv_2314	−	5.5	ATG	ATGATGATACTTTTCGAAAATCTCTTCAAACTACGTCAGCTCAGCTTTGCCTTGCTGTGTTTTGAGCAAGCTACGGTTAGCTTCCGAGTTTGA	MMILFENLFKLRQLSFALLCFEQATVSFRV	30	3.5	No
rio64	1189201–1189269	spv_1159	spv_1158	−	20	ATG	ATGGCTATAGTTGAAATTATAAATCTAACAAAAAGCTTTAAAGATATTGAAGTTATTCATAACACTTAA	MAIVEIINLTKSFKDIEVIHNT	22	2.5	No
rio65	1190190–1190255	spv_1160	spv_1161	−	1.83	ATG	ATGAAAGATAGTTATTGGTTAAATTATTTTCCGGAGTATAGTTTAGAAACGTTTGAAGTAGAATAG	MKDSYWLNYFPEYSLETFEVE	21	2.6	No
rio66	1242216–1242290	spv_1212	spv_1213	+	2	ATG	ATGTGTAAGAATCACAATAAAAAATGCTCTTCCGTCTTGGAGGAGCATTTCTTTTTATCAACGAAAATCAAATAG	MCKNHNKKCSSVLEEHFFLSTKIK	26	2.8	No
rio67	1242341–1242406	spv_1212	spv_1213	+	0.9	TTG	TTGTATCAGCAATATGTGTCTGTCAAATTTAGTGACAAAGGTAGTAGAAGAAAGATGAAGAAATAA	MYQQYVSVKFSDKGSRRKMKK	21	2.5	No
rio68	1250407–1250430	spv_1217	spv_1218	−	1.75	ATG	ATGGCTTGGATCGACAATACCTAA	MAWIDNT	7	0.8	No
rio69	1250035–1250073	spv_1217	spv_1218	−	2	TTG	TTGAATGAAGGTGGTACCGCGGTTTTTCGCCCTTCGTGA	MNEGGTAVFRPS	12	1.2	No
rio70	1264626–1264679	spv_1232	spv_2332	−	18	ATG	ATGGGGGAAGGGATAGACAAGAGATTTTATCCACATATGAAAAAAGGAGGTTAG	MGEGIDKRFYPHMKKGG	17	1.9	No
rio71	1274211–1274282	spv_1245	spv_1246	−	5.4	ATG	ATGGAAGAAAAAATCAAAATTAAACCGCATTTTTGCTTGACAATTATTCCTTTTACGTGTAGAATGAAATAG	MEEKIKIKPHFCLTIIPFTCRMK	23	2.8	No
rio72	1277771–1277803	spv_1248	spv_2334	−	1.4	ATG	ATGATGACGCTGACAATGGGAGTATTATTGTAA	MMTLTMGVLL	10	1.1	No
rio73	1287975–1288013	spv_1258	spv_1259	+	32	ATG	ATGACCGAATTAGAAAGAAAAAATCGAAAAATTAGCTAA	MTELERKNRKIS	12	1.5	No
rio74	1297923–1297994	spv_1267	spv_2337	+	9	ATG	ATGATATGGGATTTTCATATAATAAATTGTAACCGCCCAATAACGAAGTCTATTGAAAAATCTCCAGATTAG	MIWDFHIINCNRPITKSIEKSPD	23	2.7	No
rio75	1357604–1357621	spv_1342	spv_1343	−	5	ATG	ATGTTGTTGATATTTTAA	MLLIF	5	0.6	No
rio76	1357729–1357752	spv_1342	spv_1343	−	30	ATG	ATGTATATGAGTAACTATCGATAA	MYMSNYR	7	0.9	No
rio77	1404509–1404604	spv_1383	spv_1384	−	27	CTG	CTGGCAGAAACCTGTGATAGTGTCGTCATTCCGAATTTTATGCTGAAAAGTATGCTTTCCGGCCCTATCTTAAACAGCGAGACTTGTTATGATTAA	MAETCDSVVIPNFMLKSMLSGPILNSETCYD	31	3.4	No
rio78	1433395–1433523	spv_1413	spv_1414	−	5.4	TTG	TTGCTCTGGTCTTGTGTTATACTAGATAGGTTGCAAAGAAAACAGTACTTTTCTTTTGTGGAAAAGAAGCAACACGATTTTATATCTAGTTATATGAAAATACGTCATAAAAAGAAAAGTATAAACTAA	MLWSCVILDRLQRKQYFSFVEKKQHDFISSYMKIRHKKKSIN	42	5.2	No
rio79	1456875–1456949	spv_1438	spv_1439	−	117	ATG	ATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGA	MLSYVRHYPLAIAKLMCLCSPKIC	24	2.7	Yes
rio80	1457861–1457905	spv_1439	spv_1440	−	14.9	TTG	TTGGTTACAGGCATGCCAACCTGTCACTCGGATGAAGCCAAATAA	MVTGMPTCHSDEAK	14	1.5	No
rio81	1480252–1480278	spv_1464	spv_1465	+	1.6	TTG	TTGAAACGGAGGATTTTTGAATATTAG	MKRRIFEY	8	1.1	No
rio82	1528556–1528618	spv_1506	spv_1507	−	120	ATG	ATGACAGTAACGATTAAAGTAAATTACCAAACCACTTTCCAAAAGAAGGAAGCAAAAAACTAG	MTVTIKVNYQTTFQKKEAKN	20	2.3	No	srf-21
rio83	1539897–1539920	spv_1517	spv_1518	−	775	ATG	ATGATATACCATCGTTTAGAATAA	MIYHRLE	7	0.9	No
rio84	1539963–1540064	spv_1517	spv_1518	−	358	ATG	ATGGGCTTTAAAAAATATTTGAAGAATTTACCGAAAAACTCTGGATTTTTGATTTGGAGTTGGATTCAACTTATCTGGTTTGAAACATGGTTTTGGGGATAA	MGFKKYLKNLPKNSGFLIWSWIQLIWFETWFWG	33	4.1	Yes
rio85	1579688–1579789	spv_1558	spv_1559	−	140	CTG	CTGAATTTGGGCGAGCAAGGCGAGCCCCATAGAGAATACTTTTCGCTGTGGTGTAAGTTGGTACAAGTGATTGTACCAACTGCGGAAAATTTGAGACCTTAG	MNLGEQGEPHREYFSLWCKLVQVIVPTAENLRP	33	3.8	No
rio86	1673721–1673771	spv_1661	spv_1662	−	16	TTG	TTGACATTCTATCAAGCTGTCGGTCAGTTCGTTCAGTACAAGGAATCATAA	MTFYQAVGQFVQYKES	16	1.9	No
rio87	1721860–1721904	spv_1725	spv_1726	−	5.6	ATG	ATGCTTGCGACAAAAAGAGGCGATGATCTCTCTGCGGATATCTGA	MLATKRGDDLSADI	14	1.5	No
rio88	1731142–1731255	spv_1737	spv_1738	−	46	ATG	ATGAAAAGGACATATAGAGACTGTAAAAATATACTTTTGAAAAGCTTTTTAGTCTGGGGTGTTATTGTAGATAGAATGCAGACCTTGTCAGTCCTATTTACAGTGTCAAAATAG	MKRTYRDCKNILLKSFLVWGVIVDRMQTLSVLFTVSK	37	4.3	Yes
rio89	1786300–1786332	spv_1790	spv_1791	−	5	TTG	TTGCATTCGAAAAAGCTGGAAACATTTGCCTAG	MHSKKLETFA	10	1.1	No
rio90	1796868–1796975	spv_1803	spv_1804	−	9.3	TTG	TTGGTTCTCTCTTTTTTGATTTTCAGTAATTCATTTTGGCAGCGTATACTTTTTGTCTCCAGTCTTTTCAATAAATACCGTAGTTTAGGTATACACATTGAAATTTAA	MVLSFLIFSNSFWQRILFVSSLFNKYRSLGIHIEI	35	4.2	No
rio91	1814148–1814210	spv_1828	spv_1829	−	2.8	ATG	ATGAATTTCAATCTCCCAATTTATTTGTTCAAATATTGTTTTAATATATTGAATAAATTCTGA	MNFNLPIYLFKYCFNILNKF	21	2.5	No
rio92	1814385–1814408	spv_1828	spv_1829	−	1.6	ATG	ATGTTGAAAAATATCTTCGTATAG	MLKNIFV	7	0.8	No
rio93	1858646–1858711	spv_1878	spv_1879	−	41.08	TTG	TTGTTATTCTTCGTTCCTTTTTTATATTATTTTTGGTATAATTATAGTTATTCAAATTTTATTTAG	MLFFVPFLYYFWYNYSYSNFI	21	2.8	No
rio94	1907589–1907618	spv_1933	spv_1934	−	29.8	ATG	ATGCTTGAAAAGGAGTATACTTATAAGTAA	MLEKEYTYK	9	1.2	No
rio95	2006759–2006857	spv_2027	spv_2028	−	37	CTG	CTGAGAGGAAGTGTTAAACTTCGACCGCACCTGATCTGGGTAATGCCAGCGGAGGGAACGATACTTAGTCTAATTTTGCACCTTTTCCATGTATGGTAA	MRGSVKLRPHLIWVMPAEGTILSLILHLFHVW	32	3.7	No
rio96	2012589–2012618	spv_2032	spv_2033	−	5	ATG	ATGTGTAAAGGTAGGTTTACTGAATTGTAA	MCKGRFTEL	9	1	No
rio97	105596–105616	spv_2096	spv_0106	+	425	ATG	ATGGACTACGATACTTGTTGA	MDYDTC	6	0.7	No
rio98	120796–120822	spv_2100	spv_0118	+	15	ATG	ATGAGGTTGGGAAAAAACTCAATTTGA	MRLGKNSI	8	0.9	No
rio99	120952–120984	spv_2100	spv_0118	+	5.5	ATG	ATGACTTTATTTAGGTGTTTGACATTACTATAG	MTLFRCLTLL	10	1.2	No
rio100	121373–121429	spv_2101	spv_0119	+	8.5	ATG	ATGATGACTAAAGTTTTTATCAATAATTTGGGCTCCTTGTCAACTGTAGTGGGTTGA	MMTKVFINNLGSLSTVVG	18	1.9	Yes
rio101	141806–141937	spv_2113	spv_2115	+	38	ATG	ATGAGTTGGTTAGACGCTTTTCATTATAGGTCATATGGGGCTTTTTTCTACAAGAAACGACCCTATAATTCCTGGGGTGGGATTACCCACTACAGAAATTATAGAGCCAAAGCATTCCAAAGTCTTGTCTGA	MSWLDAFHYRSYGAFFYKKRPYNSWGGITHYRNYRAKAFQSLV	43	5.2	No
rio102	420072–420098	spv_2164	spv_0420	+	2	CTG	CTGTTACTAGAAAAAAGAGGACATTAA	MLLEKRGH	8	0.9	No
rio103	742170–742214	spv_2226	spv_2227	+	55	ATG	ATGAAAATTGGTCAACGAATTATGCGCTTTGGCATAAAAAATTAA	MKIGQRIMRFGIKN	14	1.6	No
rio104	811459–811533	spv_2240	spv_0792	+	27	ATG	ATGAACACATTAAATGAGAAAGTAATCAATATCTGTAAAGCAGTAGTTAAAGAAACTTTAATCCAAGACATTTAG	MNTLNEKVINICKAVVKETLIQDI	24	2.7	No
rio105	849735–849788	spv_2251	spv_0833	+	35	CTG	CTGATTGGCTTTTTCAATGTGAATCTTAACTTCATACTCCCAAAGAGGTATTAG	MIGFFNVNLNFILPKRY	17	2	No
rio106	1032903–1032932	spv_2288	spv_0918	−	12	ATG	ATGGCAAATACAGCACAGAATTTAAGATAA	MANTAQNLR	9	1	No
rio107	1037861–1037899	spv_2291	spv_0914	−	9.2	TTG	TTGTTGGTTTCGTGTCATAACAGTTATAGAGGCAAATAG	MLVSCHNSYRGK	12	1.3	No
rio108	1037928–1037963	spv_2291	spv_0914	−	7.9	ATG	ATGATAAAGTTTGTGAATATCTTAGTCCTCATTTGA	MIKFVNILVLI	11	1.3	No
rio109	1038016–1038045	spv_2291	spv_0914	−	18	ATG	ATGATTGATAAAGGCAACAAAAAATTTTAG	MIDKGNKKF	9	1	No
rio110	1278108–1278194	spv_2334	spv_1249	−	9.1	ATG	ATGAGTGAAAATTATCAAGTTGGAATGTTTGTATCTAAATATATTAGCATGTATTTAGATAAGATGTCTGCAATCCTTTATATATGA	MSENYQVGMFVSKYISMYLDKMSAILYI	28	3.3	No
rio111	1469164–1469196	spv_2369	spv_2370	−	6.8	ATG	ATGGAAAGAGGAACGAATGAAGATGAAAGCTAG	MERGTNEDES	10	1.1	No
rio112	1619475–1619567	spv_2394	spv_1605	−	4.9	TTG	TTGAGGTGGCACCGCGTTACCAACGCCCTCACACGGAAGTATATTCTGTGTGTGGGCTTTTTTCTATCCGTCGTTTGGTTTATCTTTTATTAG	MRWHRVTNALTRKYILCVGFFLSVVWFIFY	30	3.7	Yes
rio113	1619912–1619941	spv_2394	spv_1605	−	12.5	ATG	ATGGAGTGTTCTAAAATAAGTTCTGTTTAG	MECSKISSV	9	0.9	No
rio114	1751386–1751403	spv_2420	spv_1757	+	1.2	ATG	ATGTTGTTTCAGTATTGA	MLFQY	5	0.7	No

^aSee reference 65.

^bSee reference 66.

^cSee references 2 and 3. scRNA, small cytoplasmic RNA.