TABLE 1.
Number of reconstructed MAGs for the HMP data set using different workflows, and different strategies, after dereplication at strain levela
| Pipeline | Strategy | MAGs |
|
|---|---|---|---|
| HQ | MQ | ||
| ATLAS | SASB | 253 | 120 |
| METAWRAP | SASB | 302 | 295 |
| SACB | 320 | 242 | |
| CASB | 377 | 320 | |
| CACB | 386 | 350 | |
| nf-core/mag | CASB | 277 | 261 |
| CACB | 361 | 300 | |
| MAGNETO | SASB | 280 | 251 |
| SACB | 311 | 286 | |
| CASB | 277 | 261 | |
| CACB | 361 | 300 | |
a
MAGs: number of dereplicated MAGs; HQ: High Quality (Completeness > 90%, Contamination < 5%), MQ: Medium Quality (Completeness > 50%, Contamination < 10%).