Table 4.
Significant marker trait associations at Bonferroni corrected p value for traits under study at each environment.
| Trait | Condition/location | SNP | Chromosome | Position in MB | P-value | R square | -log10(P) |
|---|---|---|---|---|---|---|---|
| BIOMASS | IR_DL_2020 | AX-94466450 | 6B | 29.84924 | 4.67E-06 | 0.071452 | 5.33089 |
| CT | LS_DL_2019 | AX-94573298 | 7D | 629.4069 | 3.01E-06 | 0.20653 | 5.521182 |
| DH | LS_DL_2020 | AX-94416489 | 3A | 46.7133 | 1.51E-06 | 0.081693 | 5.820014 |
| IR_PUNE_2020 | AX-94435238 | 5D | 474.2051 | 3.92E-09 | 0.098932 | 8.407157 | |
| RI_PUNE_2020 | AX-94435238 | 5D | 474.2051 | 7.68E-10 | 0.097184 | 9.114737 | |
| IR_IIWBR_2020 | AX-94546495 | 2B | 671.7411 | 1.26E-08 | 0.069093 | 7.900783 | |
| IR_PUNE_2020 | AX-94578563 | 3A | 55.74342 | 1.40E-08 | 0.087051 | 7.852822 | |
| RI_PUNE_2020 | AX-94578563 | 3A | 55.74342 | 1.78E-07 | 0.080392 | 6.749976 | |
| IR_PUNE_2020 | AX-94631711 | 3A | 26.46988 | 3.07E-06 | 0.08455 | 5.513009 | |
| IR_DL_2020 | AX-94689491 | 3A | 618.1646 | 9.18E-10 | 0.137955 | 9.037012 | |
| IR_IIWBR_2020 | AX-94789937 | 7B | 33.53386 | 4.13E-07 | 0.076708 | 6.384131 | |
| LS_DL_2020 | AX-94940654 | 5D | 367.436 | 4.17E-06 | 0.104355 | 5.379682 | |
| IR_PUNE_2020 | AX-94941121 | 3A | 611.7026 | 3.28E-11 | 0.110475 | 10.48453 | |
| RI_DL_2019 | AX-94941121 | 3A | 611.7026 | 2.34E-09 | 0.13456 | 8.630091 | |
| RI_PUNE_2020 | AX-94941121 | 3A | 611.7026 | 2.77E-10 | 0.095057 | 9.557035 | |
| RI_DL_2019 | AX-95119024 | 1D | 9.592365 | 1.21E-06 | 0.135519 | 5.917904 | |
| RI_DL_2019 | AX-95133267 | 2D | 300.437 | 1.71E-06 | 0.138337 | 5.766205 | |
| IR_DL_2020 | AX-95170512 | 2D | 634.3167 | 4.74E-07 | 0.129128 | 6.323975 | |
| IR_DL_2020 | AX-95195332 | 6D | 304.1167 | 1.59E-09 | 0.119489 | 8.798271 | |
| RI_JR_2020 | AX-95235622 | 1D | 314.5742 | 3.25E-10 | 0.111089 | 9.488192 | |
| DM | IR_DL_2020 | AX-94463626 | 5B | 580.8401 | 1.66E-10 | 0.189125 | 9.780337 |
| IR_DL_2020 | AX-94490240 | 6D | 462.537 | 9.50E-08 | 0.192265 | 7.022311 | |
| IR_DL_2020 | AX-94513007 | 6D | 147.2393 | 3.43E-07 | 0.183054 | 6.465213 | |
| IR_IIWBR_2020 | AX-94725580 | 5B | 594.8691 | 3.20E-08 | 0.085151 | 7.494575 | |
| LS_DL_2020 | AX-94725580 | 5B | 594.8691 | 2.69E-08 | 0.09407 | 7.570521 | |
| IR_DL_2020 | AX-95186230 | 2D | 354.7437 | 2.43E-06 | 0.15434 | 5.615057 | |
| GWPS | LS_DL_2019 | AX-94505180 | 2A | 733.0912 | 1.64E-07 | 0.108636 | 6.785046 |
| RI_DL_2019 | AX-94590453 | 3A | 8.325489 | 2.69E-08 | 0.141871 | 7.569559 | |
| IR_DL_2019 | AX-94664052 | 2B | 748.1526 | 2.30E-06 | 0.081038 | 5.637959 | |
| IR_DL_2019 | AX-94988124 | 5B | 489.2835 | 4.97E-06 | 0.077532 | 5.303543 | |
| RI_DL_2019 | AX-95150902 | 7B | 200.9228 | 2.36E-07 | 0.133409 | 6.62789 | |
| NDVI.1 | IR_DL_2019 | AX-94425305 | 2A | 62.27144 | 4.79E-08 | 0.089911 | 7.319923 |
| IR_DL_2019 | AX-94659413 | 2B | 14.04945 | 4.53E-06 | 0.10992 | 5.343983 | |
| IR_DL_2019 | AX-94720192 | 3B | 417.493 | 1.69E-09 | 0.110884 | 8.771124 | |
| IR_DL_2020 | AX-94735072 | 2D | 338.6773 | 3.35E-07 | 0.078254 | 6.474963 | |
| LS_DL_2019 | AX-94762983 | 1D | 170.2247 | 1.57E-11 | 0.098748 | 10.80411 | |
| LS_DL_2019 | AX-95110974 | 1A | 463.2904 | 2.06E-08 | 0.107363 | 7.685398 | |
| LS_DL_2019 | AX-95155574 | 5B | 692.565 | 1.31E-06 | 0.116167 | 5.883924 | |
| NDVI.2 | RI_DL_2019 | AX-94436269 | 2B | 95.79736 | 6.06E-10 | 0.115805 | 9.21725 |
| LS_DL_2020 | AX-94552601 | 4B | 666.5719 | 3.51E-08 | 0.093756 | 7.454121 | |
| RI_DL_2020 | AX-94560091 | 2B | 661.4501 | 1.64E-08 | 0.078829 | 7.784441 | |
| RI_DL_2020 | AX-94658750 | 4A | 27.67354 | 3.91E-07 | 0.059888 | 6.407471 | |
| NDVI.3 | LS_DL_2019 | AX-94433353 | 5A | 460.5185 | 5.61E-10 | 0.110697 | 9.251103 |
| IR_DL_2020 | AX-94463626 | 5B | 580.8401 | 1.9E-08 | 0.121709 | 7.720863 | |
| LS_DL_2019 | AX-94935560 | 7A | 63.38946 | 9.13E-09 | 0.132109 | 8.039646 | |
| PH | IR_JR_2020 | AX-94415907 | 5B | 421.6436 | 2.25E-07 | 0.038779 | 6.648635 |
| RI_DL_2020 | AX-94599469 | 6B | 644.4316 | 3.15E-07 | 0.116949 | 6.501722 | |
| PLTY | LS_DL_2019 | AX-94390275 | 1D | 246.6495 | 1.32E-08 | 0.187926 | 7.878685 |
| LS_DL_2019 | AX-94833043 | 7B | 682.8865 | 6.12E-07 | 0.200662 | 6.212957 | |
| LS_DL_2019 | AX-94916490 | 2B | 214.2827 | 4.97E-08 | 0.20182 | 7.303398 | |
| LS_DL_2019 | AX-94997258 | 1D | 385.8051 | 5.22E-10 | 0.21241 | 9.282206 | |
| LS_DL_2019 | AX-95257885 | 2A | 16.25963 | 1.86E-07 | 0.203534 | 6.731365 | |
| TGW | RI_JR_2020 | AX-94505686 | 1D | 80.44586 | 5.32E-09 | 0.124761 | 8.273984 |
| RI_JR_2020 | AX-94598030 | 1A | 1.159536 | 1.51E-06 | 0.117123 | 5.822309 | |
| IR_PUNE_2020 | AX-94634468 | 2B | 767.3743 | 1.52E-07 | 0.073127 | 6.817671 | |
| IR_IIWBR_2020 | AX-94700391 | 3A | 700.422 | 6.70E-08 | 0.084706 | 7.173684 | |
| RI_JR_2020 | AX-95107567 | 7D | 406.8963 | 4.32E-07 | 0.12292 | 6.364986 |