Table 6.
Putative candidate genes identified at the 10 kb region of Linked SNPs along with their molecular functions.
| Trait | SNP | Gene | Position | Protein | Role | Reference |
|---|---|---|---|---|---|---|
| DH | AX-94637995 | TraesCS2D02G112700.1 | 2D: 62,401,570-62,405,841 | AIG1-type guanine nucleotide-binding (G) domain | ||
| AX-94631711 | TraesCS3A02G050211.2 | 3A: 26,472,148-26,482,725 | Wall-associated receptor kinase, galacturonan-binding domain | Regulation of root growth | Kaur et al., 2013 | |
| AX-95133267 | TraesCS2D02G328100LC.1 | 2D: 300,439,172-300,440,223 | Protein coding | |||
| AX-94578563 | TraesCS3A02G086500.1 | 3A: 55,743,110-55,743,857 | Invertase/pectin methylesterase inhibitor domain superfamily | Early development of wheat grain endosperm and outer layers | Mehdi et al., 2020 | |
| AX-94941121 | TraesCS3A02G363000.1 | 3A: 611,700,692-611,703,172 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE | L-galactose guanyltransferase, increases leaf ascorbate content | Laing et al., 2007 | |
| AX-94435238 | TraesCS5D02G410900.1 | 5D: 474,200,732-474,205,422 | AUGMIN FAMILY | Centrosome cycle spindle assembly | Hotta et al., 2012 | |
| AX-95235622 | TraesCS1D02G226200.1 | 1D: 314,573,418-314,574,779 | RAN BINDING PROTEIN | |||
| DM | AX-94513007 | TraesCS6D02G166200.1 | 6D: 147,236,496-147,241,863 | RNA recognition motif domain | ||
| AX-94490240 | TraesCS6D02G383800.1 | 6D: 462,536,412-462,540,932 | ZINC FINGER, RING/FYVE/PHD-TYPE | |||
| AX-94725580 | TraesCS5B02G418600.1 | 5B: 594,867,010-594,872,193 | Inosine-5'-monophosphate dehydrogenase | Regulation of cell growth. | Uniprot | |
| NDVI | AX-95155574 | TraesCS5B02G536500.1 | 5B: 692,559,588-692,565,223 | Serine/threonine-protein kinase, active site | Flag leaf width, plant height and water-soluble carbohydrates under drought conditions | Zhang et al., 2013 |
| AX-94552601 | TraesCS4B02G390400.1 | 4B: 666,571,620-666,572,590 | Ubiquitin-like domain | |||
| AX-94463626 | TraesCS5B02G405200.1 | 5B: 580,830,088-580,840,255 | ALPHA-N-ACETYLGLUCOSAMINIDASE | Fertilization and seed development in Arabidopsis | Ronceret et al., 2008 | |
| AX-94560091 | TraesCS2A02G444900.1 | 2A: 694,905,983-694,909,467 | Peptidase S8 and S53 | Integrin-mediated signaling pathway, calcium ion binding | Uniport | |
| AX-94436269 | TraesCS2B02G127800.1. | 2B: 95,794,615-95,797,096 | AP2/ERF DOMAIN-CONTAINING PROTEIN | Ethylene-responsive transcription factor | Djemal and Khoudi, 2015 | |
| AX-94433353 | TraesCS5A02G246700.1 | 5A: 460,516,405-460,520,083 | Protein kinase, ATP binding site | |||
| AX-94762983 | TraesCS1D02G197500LC.1 | 1D: 170,223,005-170,223,304 | Protein coding | |||
| PH | AX-94415907 | TraesCS5B02G241800.1 | 5B: 421,643,604-421,643,664 | ACTIN T1-LIKE PROTEIN | ||
| TGW | AX-94759710 | TraesCS3D02G055400.1 | 3D: 23,057,692-23,061,395 | Glycosyl transferase, family 1 | Development of Rice Endosperm | Yang et al., 2021 |
| AX-94598030 | TraesCS1A02G001900.6 | 1A: 1,162,817-1,166,405 | PEROXISOMAL MEMBRANE PROTEIN | Plant proteases, protein degradation, and oxidative stress | Palma et al., 2002 |