TABLE 3.
TP strain distribution per syphilis stage among the 93 typed patients with at least one typed sample out of the 162 included patients between 2018 and 2019 at the SHC in Amsterdam, the Netherlands
| Allelic profiles by syphilis stage |
|||||
|---|---|---|---|---|---|
| Allelic profiles | Primary | Secondary | Early latent | Total (%) | Lineage |
| 1.3.1 | 25 | 11 | 3 | 39 (42) | SS14 |
| 1.1.1 | 9 | 5 | 3 | 17 (18) | SS14 |
| 9.7.3 | 3 | 7 | 1 | 11 (12) | Nichols |
| 1.1.8 | 3 | 3 | 2 | 8 (9) | SS14 |
| 3.2.3 | 4 | 3 | 0 | 7 (8) | Nichols |
| 1.1.9 | 1 | 2 | 0 | 3 (3) | SS14 |
| 1.64a.1 | 1 | 0 | 0 | 1 (1) | SS14 |
| 1.52.1 | 1 | 0 | 0 | 1 (1) | SS14 |
| 1.17.9 | 1 | 0 | 0 | 1 (1) | SS14 |
| 1.43.1 | 0 | 0 | 1 | 1 (1) | SS14 |
| 1.66a.1 | 0 | 1 | 0 | 1 (1) | SS14 |
| 1.65a.1 | 0 | 1 | 0 | 1 (1) | SS14 |
| 30a.3.1 | 0 | 1 | 0 | 1 (1) | SS14 |
| 29a.7.3 | 0 | 1 | 0 | 1 (1) | Nichols |
| Total | 48 | 35 | 10 | 93 | |
a
New allelic variants found in this study.