TABLE 1.
Primers for qRT-PCR
| Gene | Primer sequence (5′–3′) | Gene | Primer sequence (5′–3′) |
|---|---|---|---|
| 16S rRNA-F | CAAAACTACTGAGCTAGAGTACG | PA0105F | CACGGTGGAAATCCTCTGG |
| 16S rRNA-R | TAAGATCTCAAGGATCCCAACGGCT | PA0105R | CGGCTCGGAAGTGTCGTAGAT |
| PA2637F | GGGGTTTCGTCCCTGCTT | PA0106F | CCTTCGGTGCGGTCAGT |
| PA2637R | CGATCCGCCAAAGATAGACA | PA0106R | TCAGCGAACCCTCCCACA |
| PA2638F | CGATAGGCGAACGGGAAAC | PA1553F | TGCCGAGACCGAACGCTAC |
| PA2638R | GCACGACAGCCCGAAGTTAT | PA1553R | CACGGGTAGGCAGGCATCT |
| PA2639F | GGCGACCAAGGGTATCAACA | PA1554F | GAATGGGTCTCGGTGTCCT |
| PA2639R | CCACGTCAGCCATAACGAAA | PA1554R | CAGTTCGGCGTATTCCTTG |
| PA2640F | CCGACCGTTTCGTCCTCAG | PA5554F | CGTGGGCAAGACCGTCAACA |
| PA2640R | GACCGATGCCGAGTTGCTT | PA5554R | GGTAGATACCCAGCGAGGC |
| PA2641F | CGAGATGGAGCCGAACACC | PA5555F | ACGAACCCGACGCCAAGT |
| PA2641R | AGGGAAGGGCGGTTTGG | PA5555R | TTTCCGAGATTTCCTGGGTG |
| PA2642F | TGTCTGTCCCTCGGTCTCG | PA5556F | GGAGCAGGATTCCGTGGGT |
| PA2642R | GTCGTGCGGGTGGTTGGT | PA5556R | GCCGCTGTCTTTCTGGTTG |
| PA2643F | GCCCAGACCATCTCCTACGA | PA5558F | CCGTTGCGTTCTTCATCTTTG |
| PA2643R | AGTTCCTGCTCCGCTTCCG | PA5558R | CCTTGACGCTGTTCAGTTCCT |
| PA2644F | GCTTCGCAGCCTGGTGATG | PA5559F | TGACTGCTATCGCCGTTGC |
| PA2644R | CGGCTCTTCGGGGTATTGC | PA5559R | TCCAGGAACTTGCCACCC |
| PA2645F | TGGTTCTGTTCGTCTTCGTGG | PA5560F | CCGCTTCGGGTTACATCCA |
| PA2645R | CGCCTTGGCATCTACCGTG | PA5560R | CCCATTTCCTTGGCTTGCTC |
| PA2646F | GATGAGCCTGGAAGTGATGATG | PA4468F | CTTGCCGCCCTTGCCTTAC |
| PA2646R | GGTGTGGAAGCGGCGATA | PA4468R | TGCCGCAGCAGACTTTCCA |
| PA2647F | TGCTGCTGTCGTTCTCCCG | PA4366F | AGCCGCACATTTCCGCA |
| PA2647R | CGTTGTTGCGATTGCTGTAGTA | PA4366R | GGGCTCAGGCAGTTCCAGTA |
| PA2648F | GGCGTGCTCTCGGTCCTC | PA4613F | GAACGCCTTCCGTCCCG |
| PA2648R | TTGCCGTCATCGGAACTGT | PA4613R | GCGGATGAAGAAGGTCGGG |
| PA2649F | TGAACATCTCCCTGAGCGTC | PA4236F | ATGCGACCTTCAAGTGGGA |
| PA2649R | GCCCCAGTTGAACGGTGC | PA4236R | GGGTAGTCACCGTGGGGC |
| PA2691F | TGCCCTGATGACCTGCCA | PA2147F | GAAGGGCGACTATCCCGAAT |
| PA2691R | ATCTTCTTGCCCTCCTCGC | PA2147R | CAGCGGGTCGTTGGTGA |
| PA4538F | AACCTCACCCACATCTGGAAAC | PA5240F | GCCCTGTGCTGGTGGACT |
| PA4538R | GATACTCACTGCGTTGTTGTTCG | PA5240R | TTCGGCGGGGTATCCTG |
| PA1581F | TCAAACTCCCTGTCACCGCT | PA2616F | CCTGGACGAGGTGCTGGG |
| PA1581R | CACGCTTACCGCCTTCCA | PA2616R | GGTCGGTGTTCGGCTTGTG |
| PA1582F | TGTCATTTTCCTGCTGGGCT | PA0139F | GCTGCCTTCACCTTCAACTGC |
| PA1582R | GTCCACATACCGACCCACG | PA0139R | GGACGGAGCGAGGGTCTTCT |
| PA1583F | CGACCCGAACGACGATTG | PA1008F | CCGACTTCACCGCCCCC |
| PA1583R | CGAACGGACGCTGGTAGATG | PA1008R | TGGCAGACCGCTTCATCCT |
| PA1584F | TCAAGGAACAGGACGAGGGC | PA0407F | GATGCCTCCCGCTGGTTC |
| PA1584R | AGAAGGACGGGCAGGAGG | PA0407R | AACTGCGTGGCGAAGAACT |